New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP006584 1840765 =5 (0.120)39 (0.940) 37/586 0.2 88.6% intergenic (+248/‑63) LY180_08735/LY180_08740 pyruvate kinase/murein lipoprotein
?CP006584 = 1840785 NA (NA)intergenic (+268/‑43) LY180_08735/LY180_08740 pyruvate kinase/murein lipoprotein

GTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006584/1841048‑1840765
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAG  <  CP006584/1840785‑1840489
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
GTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAA                                                                                                                                                                                                                                                                                             >  1:380044/1‑298
     caggtgGTCCAAACGTTGGTTAGCACTGGCTGCGTCAGCTTTAGCAGGCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTT                                                                                                                                                                                                                                                                                        <  2:380044/292‑1
          TGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTAT                                                                                                                                                                                                                                                                                   <  1:316451/298‑1
             CCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTT                                                                                                                                                                                                                                                                                <  1:205193/298‑1
              CAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTG                                                                                                                                                                                                                                                                               <  1:36148/298‑1
                   GCTGGTTAGCACGAGCTGCATCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTTCTCAGATGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGGAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAAT                                                                                                                                                                                                                                                                          <  1:168446/298‑1
                            CACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTG                                                                                                                                                                                                                                                                 <  1:320229/298‑1
                                                          CGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAAT                                                                                                                                                                                                                                                                          >  2:114780/1‑259
                                                          CGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAAT                                                                                                                                                                                                                                                                          <  1:114780/259‑1
                                                                      TTGGGTTGACGTGGTTTCTCAGTTGGTCAACTTTAGCGTTCATGGTCTGAACGTGAGAAGACAGCTGTTCGATTTTAGCGTTGCGGGAGCAACCTGCCAGCAGATTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCAT                                                                                                                                                                                                                       <  2:374135/298‑1
                                                                       TGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATC                                                                                                                                                                                                                      <  1:215876/298‑1
                                                                           TTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTT                                                                                                                                                                                                                                                                     >  1:147358/1‑247
                                                                           TTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTT                                                                                                                                                                                                                                                                     <  2:147358/247‑1
                                                                             CACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGC                                                                                                                                                                                                                <  1:416269/298‑1
                                                                                  CGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGT                                                                                                                                                                                                           >  1:83313/1‑298
                                                                                                  AACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATT                                                                                                                                                                                           <  1:37451/298‑1
                                                                                                      TTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGAGTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGA                                                                                                                                                                                       <  1:358507/298‑1
                                                                                                           GTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGCTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTTAGAATATTTTTTTGATGGTAAGGAACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAA                                                                                                                                                                                  >  2:113817/1‑298
                                                                                                            TTCAGAGTCTGAACGTTAGAAGACAGCTGATAGAGTTTAGGGTTGCTGGGGCAACCTGCCAGCAGAGTAAAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAAC                                                                                                                                                                                 <  2:384694/298‑1
                                                                                                                        ACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCA                                                                                                                                                                     >  1:18647/1‑298
                                                                                                                                 GACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCA                                                                                                                                                            >  1:263751/1‑298
                                                                                                                                         ATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGAT                                                                                                                                                    >  1:63746/1‑298
                                                                                                                                                           GGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGT                                                                                                                                  <  1:268554/298‑1
                                                                                                                                                                AACCTGCGAGCAGTGTAGAATCCAGGATTACCGCTCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGGTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAAT                                                                                                                             <  2:201167/298‑1
                                                                                                                                                                                AGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTAATCTTAGATAAAGTAGGATTAAATAGTGAAAACCGAATTGATTTTTTA                                                                                                             >  2:179157/1‑298
                                                                                                                                                                                   ACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTG                                                                                                          >  1:186446/1‑298
                                                                                                                                                                                               CGCTCCCAGTACCAGTTTAGTATGTTTAATGATTAATACCTTTCAGTTATAGTTAATCTCCATTTAGGGTTACAAGTATTACACAAAATTTTTCAAGTATTACACAAAGGTTTTTATTTTGAGAATATTTTTTTGATGTGAAGGCACTTATTTGTGATCTGTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCGTCCATCGGATTCATCTTAGATAATGTGCGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATC                                                                                              <  2:291453/298‑1
                                                                                                                                                                                                      AGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAA                                                                                       <  1:271604/298‑1
                                                                                                                                                                                                      AGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAA                                                                                       >  2:106870/1‑298
                                                                                                                                                                                                                            TTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGC                                                                 >  1:46505/1‑298
                                                                                                                                                                                                                                 AATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTC                                                            <  2:83313/298‑1
                                                                                                                                                                                                                                    ACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGAT                                                         <  2:63746/298‑1
                                                                                                                                                                                                                                                         TCCATGTAGCGTTACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAG                                    >  2:7147/1‑298
                                                                                                                                                                                                                                                                tactTTACATGTATTACACAAATTTTTTTAAGTATTACACAAAGTGTTTTATGGTGAGAATAATTTGTTGATGGGAAGGCACTTATTTTTGATCGTTCGCGCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATT                             <  2:263751/294‑1
                                                                                                                                                                                                                                                                     TACAAGTATTACACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGG                        <  1:7147/298‑1
                                                                                                                                                                                                                                                                                CACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGA             >  1:381572/1‑298
                                                                                                                                                                                                                                                                                 ACAAAGTTTTTCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGAT            <  1:179157/298‑1
                                                                                                                                                                                                                                                                                           TCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGTTGTTAG  >  1:235942/1‑298
                                                                                                                                                                                                                                                                                           TCAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTAGATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTCAATAAAAAAATCACCCATCAGGGCGCTTCGATATACAAATTAATTCCCAAAAGCACTATTACAGGACGTGAACATATACGGTTTTAG  >  2:112364/1‑298
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
GTAGCCATGTTGTCCAGACGCTGGTTAGCACGAGCTGCGTCATCTTTAGCAGCCTGAACGTCGGAACGCATTGCGTTCACGTCGTTGCTCAGCTGGTCAACTTTAGCGTTCAGAGTCTGAACGTCAGAAGACAGCTGATCGATTTTAGCGTTGCTGGAGCAACCTGCCAGCAGAGTAGAACCCAGGATTACCGCGCCCAGTACCAGTTTAGTAGCTTTCATTATTAATACCCTCTAGATTGAGTTAATCTCCATGTAGCGTTACAAGTATTACACAAAGTTTTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  CP006584/1841048‑1840765
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CAAGTATTACACAAAGTTTTTTATGTTGAGAATATTTTTTTGATGGGAAGGCACTTATTTTTGATCGTTCGCTCAAAGAAGCATCGAACGCTGGGTTTTAGATAAAAAAATTGAGAGAAAACAGGATGCTTCCATCGGATTCATCTTAGATAAAGTGAGATTATATAGTGAAATCCGATTTGATTTTTTATTGCTTCTGGTTATCGATTAAATAAAAAAAGCGCCCATCAGGGCGCTTCGATATACAAATTAATTCACAAAAGCAATATTACAGGACGTGAACAGATGCGGTGTTAG  <  CP006584/1840785‑1840489

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: 
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.