New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 2385052	0 (0.000)	32 (0.770)	30/586	0.5	100%	coding (727/1026 nt)	LY180_11390	microcin C ABC transporter permease
	?	CP006584	2565084 =	NA (NA)					intergenic (+70/‑107)	LY180_12185/LY180_12190	D‑serine dehydratase/hypothetical protein

ACATGCTTGGCTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAA‑GCGAGAACAAAACATAACATCAAACGAAT  >  CP006584/2564794‑2565372                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                  aCATGCTTGGCTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGaa                                                                                                                                                                                                                                                                                            <  1:166768/298‑1 (MQ=255)      cTTGGCTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATcccc                                                                                                                                                                                                                                                                                       <  1:61158/298‑1 (MQ=255)          gctggctgggGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAAt                                                                                                                                                                                                                                                                                   <  1:97869/298‑1 (MQ=255)                                                   gCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCt                                                                                                                                                                                                                                          <  1:239070/298‑1 (MQ=255)                                                            ggTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCCATCCTTTCCCTGGGTGAGCGATGCTGCCCATGGCGCAGACTTAAGACTGATGAATCCCCTATGTATTTTTGAAAAAATCATTAAGCTAAGGTGGAAACACATCGTGTCatttt                                                                                                                                                                                                                                 >  2:228811/1‑295 (MQ=255)                                                              tATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTGACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATATCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAACAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGCTGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGAt                                                                                                                                                                                                                               <  1:380020/298‑1 (MQ=255)                                                                     ggACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATgg                                                                                                                                                                                                                        >  1:184902/1‑298 (MQ=255)                                                                         gtCAGCGCGGGTGAGCATCTGTAACTTCACAACCGATGGCGCGTTTGAGGGCAGAACAACTGCGTGAGCCCACTCAGCTGGTGTGTGAGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAAACAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTc                                                                                                                                                                                                                    <  2:60979/297‑1 (MQ=37)                                                                           cAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTcgc                                                                                                                                                                                                                  <  1:248075/298‑1 (MQ=255)                                                                                cgTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCAGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCCGCATCGAAATCCTTTCACTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATTAATCCCCAAATGATTTGGGTAAAAATCATAAACGTAAGGTGGAAACACATCTTTTCATATGATACACTGGTTCCGTCaaaa                                                                                                                                                                                                             >  2:395769/1‑298 (MQ=255)                                                                                 gtgtgtGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGaaaaa                                                                                                                                                                                                            >  1:77220/1‑298 (MQ=255)                                                                                                               cgatgTTTCGGCGCAGAACATATGCGTAATAGCAGTCATCTGGTGTTGACGACGGGAGGTGTAATGTGGCCGGAAGAAGTGATGAACGAATAGCTGGCTGAAGGCCGTTAATGACGGTTCCAGGCATCAGAGCGAGGCGTTTCCGGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACt                                                                                                                                                                              <  2:137168/294‑1 (MQ=18)                                                                                                               cACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACt                                                                                                                                                                              >  1:311618/1‑298 (MQ=255)                                                                                                                                             aCCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAAtt                                                                                                                                                >  1:120219/1‑298 (MQ=255)                                                                                                                                                    aTCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGcccc                                                                                                                                         <  1:213116/298‑1 (MQ=255)                                                                                                                                                                  aCGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTaaa                                                                                                                           <  1:163353/298‑1 (MQ=255)                                                                                                                                                                                                   aaTCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAACATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGCCTCTCTTTACCAATTCTGCCCCCAATTACACTTAAAAAGACCAAACAGCTAAACGTTCGCTTGCCAccc                                                                                          >  2:422616/1‑296 (MQ=255)                                                                                                                                                                                                       aaTATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTa                                                                                      <  1:67666/298‑1 (MQ=255)                                                                                                                                                                                                                        cGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGCTGGCGCAGACTTAAGACTGATGAATCCACTAATGATTTTGTTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAACAATCAATAAACAGACAACAAGATGTGAGAACTAGACATCTAACACGCCTCTCTTTAACAATTCTGCCCCGAATTACACTTAAACAGACTCAACAGCGTAAAGTTTGCTTTCCAAACGTGCCTTGACTGTAAAAccct                                                                     >  2:202239/1‑298 (MQ=18)                                                                                                                                                                                                                        cGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAActct                                                                     <  1:34923/298‑1 (MQ=255)                                                                                                                                                                                                                                                   cAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAACTCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCATTTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCAGTCATTCCTTGACTGTAAAACCTTCACCCTAACCTAACtcgcgcgtacctt                                          >  2:123911/1‑286 (MQ=17)                                                                                                                                                                                                                                                   cAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCt                                          <  1:22320/298‑1 (MQ=255)                                                                                                                                                                                                                                                        cTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGccaa                                     <  2:120219/298‑1 (MQ=255)                                                                                                                                                                                                                                                                    gAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAA‑GCGAGaa                        <  1:228811/298‑1 (MQ=255)                                                                                                                                                                                                                                                                              gcCGATGGCGCAGACTTAAGACTGCTGAATCTCCTAATGATTTGGGTAAAAATCATTAAGTTAAGGTGGATCCACATCTTGTCATATGATCAAATGGTTTAGAGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATCCTGCCACGAATTACACTTAAAACGATTCAACCTCTTAACGTTGGATTGCCACGCATTACTTTACTGACAAACTCCCACTCTTCCCAAACATGGCCTTCACCTGCCCACCCAA‑CCCAAACCAAaacctac              >  2:249364/1‑297 (MQ=11)                                                                                                                                                                                                                                                                                  aTGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCAACCCATTACTTGACTGTAAAACTCTCACTCTTACCGACCTTGGCCGTAACCTGCCAACCAAA‑ACGAAAACAAAAAAAAAAATc          >  2:236211/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                     gagcAGACTTAAAACTGATGAATCCCCTAATGGTTTTGGGAAAAATAATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAAGCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCACCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAA‑GTGAGAACAAAACATAACATCaaa       <  2:311618/296‑1 (MQ=255)                                                                                                                                                                                                                                                                                          gACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAACATCATTAAGTAAAGGTGGATACACATCTTGTTAGATGATCAAATGGTTTCGAGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATAGTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAACAAGACTCCACAGCTTAACTTTGGCCTGACACGCATTACTTCACTGTACAACCATCCATCTTAGCGAACTTGGCCGCAACCTGCCAACCAAACGCGA‑AAAAAaacagaaccataaaagaat  >  2:87005/1‑287 (MQ=11)                                                                                                                                                                                                                                                                                                   |                                                                                                                                                                                                                                                                                                  ACATGCTTGGCTGGCTGGCGCAGGAAGAAGGTATTCGTCTTGAACCTTCGGCACTGGCGGGTATGGCCGGACCTCAGCGCGTGTGTGCATCAGTAAGTTACCAACAGATGCACGGTTTCAGCGCAGAACAACTGCGTAATACCACTCATCTGGTGTGGGCGACGGGAGGTGGAATGGTGCCGGAAGAAGAGATGAATCAATATCTGGCAAAAGGCCGTTAATAACGTTTCAACGCAGCATCGCAATCCTTTCCCTGGGTGAGCGATGCTGCCGATGGCGCAGACTTAAGACTGATGAATCCCCTAATGATTTTGGTAAAAATCATTAAGTTAAGGTGGATACACATCTTGTCATATGATCAAATGGTTTCGCGAAAAATCAATAATCAGACAACAAGATGTGCGAACTCGATATTTTACACGACTCTCTTTACCAATTCTGCCCCGAATTACACTTAAAACGACTCAACAGCTTAACGTTGGCTTGCCACGCATTACTTGACTGTAAAACTCTCACTCTTACCGAACTTGGCCGTAACCTGCCAACCAAA‑GCGAGAACAAAACATAACATCAAACGAAT  >  CP006584/2564794‑2565372

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.