Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC JC	CP006584	2,505,263	Δ394 bp	intergenic (‑620/‑500)	LY180_11895 ← / → LY180_11905	hypothetical protein/phosphate acetyltransferase

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	CP006584	2505263	2505656	394	27 [0]	[1] 28	LY180_11895/LY180_11905	hypothetical protein/phosphate acetyltransferase

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	CP006584	= 2505262	0 (0.000)	27 (0.650)	27/586	0.6	98.2%	intergenic (‑619/‑894)	LY180_11895/LY180_11905	hypothetical protein/phosphate acetyltransferase
	?	CP006584	2505657 =	1 (0.020)					intergenic (‑1014/‑499)	LY180_11895/LY180_11905	hypothetical protein/phosphate acetyltransferase

AACATCATCACCTGCCACCTGGGCAGCGGTGGTTCCGTTTCTGCTATCCGCAACGGTAAATGCGTTGACACCTCTATGGGCCTGACCCCGCTGGAAGGTCTGGTCATGGGTACCCGTTCTGGTGATGGGTACCGAGCTCGAATTCCGCGCGCCCGATGAATTGATCCCGGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGAATTGGTCGACAAGCTCCCCATCGATCCGGCGATCATCTTCCACCTGCACGACACCCTGGGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATACATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGAACTGTCTCTGGGCAAACTGGGCGTGCTGGGCTTTGAAGTTG  >  CP006584/2505393‑2505947                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    tattctggcacaaaaaccagaactgtctgcgcagctgactgctatcggtcaccgtatcgtacacggcggcgaaaagtataccagctccgtagtgatcgatgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGAc                                                                                                                                                                                                                                                                    <  2:341862‑M2/34‑1 (MQ=255)                                            atcggtcaccgtatcgtccacggcggcgaaaagtataccagctccgtagtgatcgatgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaataagctctgaaatctttcccacagctgaaagacaaaaccgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCCTGAGCGTTGACGCAATCAACAAACTGCTGCCCAAAGAGTCTTGCCTTATGGCGCTCACCACAGTCACcagccaa                                                                                                                                                                                                                         >  2:364818‑M2/222‑295 (MQ=255)                                                                           agtataccagctccgtagtgatcgatgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑cgacga                                                                                                                                                                                         >  1:346985‑M2/191‑298 (MQ=255)                                                                            gtataccagctccgtagtgatcgatgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGAACAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGaa                                                                                                                                                                                        >  1:11526‑M2/190‑298 (MQ=255)                                                                                 ccagctccgtagtgatcgatgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAaagaag                                                                                                                                                                                   <  1:206763‑M2/114‑1 (MQ=255)                                                                                                tcgatgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCaa                                                                                                                                                                    >  1:205600‑M2/170‑298 (MQ=255)                                                                                                    tgagtctgttattcagggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGa                                                                                                                                                                <  1:105843‑M2/133‑1 (MQ=255)                                                                                                                    ggtatcaaagatgcagcttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGc                                                                                                                                                <  1:125731‑M2/149‑1 (MQ=255)                                                                                                                         aaaagatgcagcttctttggcaccgttgcacaccccggcttacctgagcggtatctaagaatgtctgaaatctttcccacagctgaaagacaaaagcgttgctgtatttgacaccgccttccaccagactatgccggaagagtcGCATGATCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGc                                                                                                                                           <  2:365078‑M2/154‑1 (MQ=255)                                                                                                                                    tttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCg                                                                                                                                <  1:323559‑M2/165‑1 (MQ=255)                                                                                                                                    cttcttttgcaccgctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCg                                                                                                                                >  1:595‑M2/134‑298 (MQ=255)                                                                                                                                               ccgctgcacaacccggctcacctgatcggtatcgaaaaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACt                                                                                                                     <  1:78706‑M2/176‑1 (MQ=255)                                                                                                                                                 gctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGAcc                                                                                                                                                                                                                                                                   >  1:28190‑M2/121‑155 (MQ=255)                                                                                                                                                 gctgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGAcc                                                                                                                                                                                                                                                                   <  2:28190‑M2/35‑1 (MQ=255)                                                                                                                                                   tgcacaacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTgcgc                                                                                                                 >  1:367963‑M2/119‑298 (MQ=255)                                                                                                                                                        aacccggctcacctgatcggtatcgaagaagctctgaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAATCACGCCGAC‑ACAGAAGACGCGAAGGGCGCAATGGGCGCTTCCTGCCACCGCCCGGCCAAATGCAACCGTGCCTCCCCTGCGctgctg                                                                                                            >  2:101621‑M2/114‑298 (MQ=255)                                                                                                                                                                               tCCTATTCTCTAGAAAGTATAGGAACTTCGAATTGGTCGACAAGCTCCCCATCGATCCGGCGATCATCTTCCACCTGCACGACACCCTGGGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATACATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCtgttgt                                                                                     <  1:304665/298‑1 (MQ=255)                                                                                                                                                                                           gaaatctttcccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttcaaccagactatgccgtaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACtggtgg                                                                         <  1:415383‑M2/220‑1 (MQ=255)                                                                                                                                                                                                     ccacagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGaa                                                               >  1:391837‑M2/69‑298 (MQ=255)                                                                                                                                                                                                       acagctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGaaaa                                                             >  1:153658‑M2/67‑298 (MQ=255)                                                                                                                                                                                                          gctgaaagacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGc                                                          >  1:364152‑M2/64‑298 (MQ=255)                                                                                                                                                                                                                 gacaaaaacgttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATg                                                   >  1:263640‑M2/57‑298 (MQ=255)                                                                                                                                                                                                                          gttgctgtatttgacaccgcgttccaccagactatgccggaagagtcGCGTGAGCGTTGACGCAATCAACAAACTGTTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGaa                                          <  1:55047‑M2/251‑1 (MQ=255)                                                                                                                                                                                                                                gtatttgacaccgcggtcccccaggctaggccggaagggtgGGATGAGGGGTGACGCAAGCAACAAACTGCTGACCAAAGCGTCTGGCCTGCTGGTGCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGAACTGtct                                    <  2:367963‑M2/257‑1 (MQ=255)                                                                                                                                                                                                                                          ccgcgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGAACTGTCTCTGGGCAAAc                          >  1:42071‑M2/32‑298 (MQ=255)                                                                                                                                                                                                                                             cgttccaccagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTTGTGAACTGTCTCTGGGCAAACTgg                       <  1:89444‑M2/270‑1 (MQ=255)                                                                                                                                                                                                                                                   accagactatgccggaagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGAACTGTCTCTGGGCAAACTGGGCGTGc                 <  1:180681‑M2/276‑1 (MQ=255)                                                                                                                                                                                                                                                                  aagagtcGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATGCATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGAACTGTCTCTGGGCAAACTGGGCGTGCTGGGCTTTGAAGTTg  <  1:364818‑M2/291‑1 (MQ=255)                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                    AACATCATCACCTGCCACCTGGGCAGCGGTGGTTCCGTTTCTGCTATCCGCAACGGTAAATGCGTTGACACCTCTATGGGCCTGACCCCGCTGGAAGGTCTGGTCATGGGTACCCGTTCTGGTGATGGGTACCGAGCTCGAATTCCGCGCGCCCGATGAATTGATCCCGGAAGTTCCTATTCTCTAGAAAGTATAGGAACTTCGAATTGGTCGACAAGCTCCCCATCGATCCGGCGATCATCTTCCACCTGCACGACACCCTGGGCATGAGCGTTGACGCAATCAACAAACTGCTGACCAAAGAGTCTGGCCTGCTGGGTCTGACCGAAGTGACCAGCGACTGCCGCTATGTTGAAGACAACTACG‑CGACGAAAGAAGACGCGAAGCGCGCAATGGACGTTTACTGCCACCGCCTGGCGAAATACATCGGTGCCTACACTGCGCTGATGGATGGTCGTCTGGACGCTGTTGTATTCACTGGTGGTATCGGTGAAAATGCCGCGATGGTTCGTGAACTGTCTCTGGGCAAACTGGGCGTGCTGGGCTTTGAAGTTG  >  CP006584/2505393‑2505947

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑