| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 3,513,918 | 0 | G | . | 26.8% | 101.3 / 39.2 | 42 | intergenic (‑94/+245) | tldD/LY180_16725 | protease TldD/membrane protein |
| Reads supporting (aligned to +/- strand): ref base G (11/19); new base . (4/7); total (16/26) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.82e-01 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
ACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCGCAACACTT > CP006584/3513624‑3514200 | acCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGttt < 1:271420/298‑1 (MQ=255) ccTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCt > 1:92783/1‑298 (MQ=255) gATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAt < 1:39047/298‑1 (MQ=255) catcgtttttgctactcgttagttactgcagtagaggattttttacggctgccggatgcggcgtgaacgccctatccagcctacggttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgacctacggttatgttccgtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgccggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGAc < 1:176087‑M1/36‑1 (MQ=255) tAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGACGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCAGCTAGCAATTGTTCACTTACCAGGTTAAGCCTCATCGTCCTTGCTCCTCGTTAGTTGCTGCCATAGAGGAATTTTTACGGCTCCCGGCTGCGGCCCGCACGCCCCATCCACCCTCCGGTTTTGTTCCGCTTTGTGGGCCttaataacccgcccg > 2:242618/1‑284 (MQ=255) aaGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGc < 1:352938/298‑1 (MQ=255) cgtgcgattttAATAATGCAGTGTTCTACAACCCAGGTGTCGTGATAGCGCGACG‑GAAAAAGGAGATCGCCATAATCAAGGGGCCGTTCGGCCAGTTGACCGAGGTTCGTGAACAAGTCCTGATGTTTCAGGCCGTTCGCCACTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTGGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTGCCGGTTTGTAGGCCTGATAAGACGCACAGCGt < 2:62458/290‑1 (MQ=255) gctactcgttagttactgcagtagaggattttttacggctgccggatgcggcgtgaacgccctatccagcctacggttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgacctacggttatgttccgtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgccggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTc < 1:128175‑M1/46‑1 (MQ=255) tttAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAg > 1:358444/1‑298 (MQ=255) aataatGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCACTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTcagatcggaag > 1:62458/1‑288 (MQ=255) taatGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAAc < 1:117944/298‑1 (MQ=255) tgcagtagaggattttttacggctgccggatgcggcgtgaacgccctatccagcctacggttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgacctacggttatgttccgtttgtaggcctgataagacgcacagcggcgcatcaggcaacggctgccggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAGAACGCGCAGCGTCGCATCCGGCAACGGCt < 1:224825‑M1/62‑1 (MQ=255) cGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTg < 1:261731/298‑1 (MQ=255) ggTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGt < 1:364762/298‑1 (MQ=255) ttctAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGa > 1:55526/1‑298 (MQ=255) tcctAAACCCCAGGATACGGGGTGGC‑AGACTGGAAAATAAGGATCGCATTAATCAAGGCGAGGTTCGGCCAGTTGACGGAGAAGAGCGAACAATGCCCGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACGGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGa < 2:387440/296‑1 (MQ=37) tAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAAAGCCTTATCCg > 1:387154/1‑298 (MQ=255) ttaaaaTAGATGTCGCCAGAATCCAGGTCACGGTCGGCCAGTTGACCGAGGATTGCGAACAAGTCCTGATGTTTCCGGCCGTTCGCCGCTAGCCATTGTTCACTTACCAGGGTAAGACTCCTCGTTTTGGCTACTCGTTAGTTACTTCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAGCGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGt < 2:189969/296‑1 (MQ=37) aaaTAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTACACGCCTTATCCGACCTACGGTTAt > 1:179023/1‑298 (MQ=255) accGCCATAATCAAGCGGCCGTTCGGCCAGTTGACCAGGGATCGCGAACAATTCCGGTTTTTTCAGGCCGTTCGCGGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGAGAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTCATGTTCCGtt < 2:142606/296‑1 (MQ=255) tCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTCATGTTCCGttt > 1:142606/1‑298 (MQ=255) ccATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTa < 1:374827/298‑1 (MQ=255) aTAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGCGAACCCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGCTCACACGCCCAGCGTCCCCTCCGGCAACGGCTGTCGGATGCGGCGGAAACGCCCTACCCCGCCTACGTCTATGTTCCGTTTGtctg > 2:403235/1‑295 (MQ=255) gcggcacattcaCCGGGGATCAGGAACTAGGCCTGAGTGTTGGGGTCGTTGGCCGGTGGTAATGGTTGACTTCCCATGTTAGGACTATTCTTTGTGGCTACTGGTTGGTTACTGCAGGGGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTCTCAAGCCGACGGTGATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGcaca < 2:220939/287‑1 (MQ=18) gACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATc < 1:220092/298‑1 (MQ=255) agattttttacggctgccggaggcggcgtgagcagccaaaccatcctacgtttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATgc > 1:37941‑M1/137‑298 (MQ=255) tacggctgccggatgcggcgtgaacgccctatccagcctacggttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGaa > 1:296567‑M1/129‑298 (MQ=255) tttCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTACGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGAACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGGaaa < 1:52677‑M2/298‑4 (MQ=255) gctgccggatgcggcgtgaacgccctatccagcctacggttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGcc < 1:37378‑M1/174‑1 (MQ=255) aCTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaaacgccttatccgacctacggttatgttccgt < 1:73705‑M2/298‑34 (MQ=255) cTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaaacgccttatccgacctacggttatgttccgtt > 1:182442‑M2/1‑264 (MQ=255) gttatgttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCtt > 1:331920‑M1/87‑298 (MQ=255) ttccggtttgtaggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAAGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGGTATGTTCTGGCTCGTTGGCCTTTGGCaa < 1:331998‑M1/218‑1 (MQ=255) cATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaaacgccttatccgacctacggttatgttccgtttgtaggcctgataagac < 1:176087‑M2/298‑52 (MQ=255) gCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTaaacgccttatccgacctacggttatgttccgtttgtaggcctgataagacgcacagcgtc < 1:128175‑M2/298‑62 (MQ=255) ggcctgataagacgcacagcgtcgcatcaggcaacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTAt < 1:151295‑M1/230‑1 (MQ=255) tGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGGCGCATCAGGCAACGGCTGCCGGATGCGGCGTaaacgccttatccgacctacggttatgttccgtttgtaggcctgatagaacgcgcagcgtcgcatccggcaacggct < 1:224825‑M2/298‑78 (MQ=255) caacggctgtcggatgcggcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCaaa > 1:265853‑M1/38‑298 (MQ=255) gcgtaaacgccttatccgaCCTACGGTTATGTTCCG‑TTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCttt < 1:98171‑M1/279‑1 (MQ=255) ccTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCGCAACACt > 1:304919/1‑298 (MQ=255) cTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGCCGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTCGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTGTGTTGTGGCCCGTGGGCCTTTGGCAACGATTATCCTAGGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCGCaaagcgt > 1:212998/1‑293 (MQ=37) cTACGGTTATGTTCC‑GTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCGCAACACtt < 1:403235/298‑1 (MQ=255) | ACCAACGCCCTGATCGATGTTGTAAGAACCATCTTTAATAATGCGGTCTTCTAAAACCCAGGATTCGTGATAGCTCGACT‑GAAAATAGAGATCGCCATAATCAAGGCGACGTTCGGCCAGTTGACCGAGGATCGCGAACAAGTCCTGATGTTTCAGGCCGTTCGCCGCTAGCAATTGTTCACTTACCAGGTTAAGACTCATCGTTTTTGCTACTCGTTAGTTACTGCAGTAGAGGATTTTTTACGGCTGCCGGATGCGGCGTGAACGCCCTATCCAGCCTACGGTTATGTTCCGGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGTCGGATGCGGCGTAAACGCCTTATCCGACCTACGGTTATGTTCCGTTTGTAGGCCTGATAAGACGCACAGCGTCGCATCAGGCAACGGCTGCCGGATGCGGCGTGAACGCCCTATCCGACCTACGGTTATGTTCTGGCTCGTTGGCCTTTGGCAACGATTATCCTATGAGATTGGGGCAATTACGCGCCCTCGTCAAATCATTGCGCTTTTTCTTTACGCGGTTGGCGCAACACTT > CP006584/3513624‑3514200 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |