Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	1,168,401	C→A	S606* (TCG→TAG)	LY180_05445 →	glucosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	1,168,401	0	C	A	94.9%	114.3 / ‑5.7	39	S606* (TCG→TAG)	LY180_05445	glucosyltransferase
Reads supporting (aligned to +/- strand):  ref base C (0/0);  major base A (14/23);  minor base G (1/1);  total (15/24)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CCGGTTCACCGTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGC  >  CP006584/1168106‑1168690                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                  ccGGTGCCCCGTGGGGTTTTCCTGACGGGCGTGATGTTTTGTTTTTCCGCTCCGCTGTGGTTTATGTTCCTCTCGCGCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGGTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTTGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGt                                                                                                                                                                                                                                                                                                 <  2:246382/298‑1 (MQ=255)                   ttCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCttt                                                                                                                                                                                                                                                                               <  1:266651/298‑1 (MQ=255)                        cgcGGGCGTTGTGTTTTCTCGCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTcc                                                                                                                                                                                                                                                                          <  2:42923/296‑1 (MQ=255)                            ggCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGtgc                                                                                                                                                                                                                                                                      <  1:307277/298‑1 (MQ=255)                                     tCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTc                                                                                                                                                                                                                                                             <  1:318916/298‑1 (MQ=255)                                        ttttctccccttccgctGTGGTTTCTGTTCCTCGCGGTGCTTTC‑TGCTGTGGAGGTATGAAGTGCGTTGACCGACCCGAAATACGTCCGGCAACCACGGCTGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGGGCTGGCGATTGCACTTTTGGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCgg                                                                                                                                                                                                                                                          <  2:238950/287‑1 (MQ=255)                                          tctttcCCCTCCGCTGTTGTTTATGTTCCTCGCGCTCTCTACGTGC‑TTGCAGGTAGTACATGCGTTGACCGAGCCGCAATACGTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTa                                                                                                                                                                                                                                                        <  2:40271/298‑1 (MQ=255)                                                            gTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACg                                                                                                                                                                                                                                      <  1:336413/298‑1 (MQ=255)                                                                aTGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCt                                                                                                                                                                                                                                  <  1:286857/298‑1 (MQ=255)                                                                      cTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTCCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATTGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTGTCTTATCTGTTGCAAAGGCACGAAAGCATCCGGCGGCTCCTGCCGCGCTACATTATAGATACTGCTCACATTGCTTTTTCCCGTCCTGCTACCTCTGGTAGGCAGCCTTTTCCATCCGGTCTTCGttt                                                                                                                                                                                                                            >  2:318260/1‑297 (MQ=255)                                                                            ctctctAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCCGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCCCTCTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGGTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGCATACGGCGGCTTCTGGCGCGCTACGTTATATTTGATGCTGGACATGCTTTTTTCCGTGCTGCTGGCTCCGTTAACCATGCTGTTCCCTACGGTCTCCGTTGTCAgcc                                                                                                                                                                                                                      >  2:118634/1‑297 (MQ=255)                                                                             tctctAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAgcgc                                                                                                                                                                                                                     >  1:369803/1‑298 (MQ=255)                                                                                                       tGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCTGCTATGGTGCTGTTGTTCCTGCCGAAGTTATTTAGCATTTTGCTTATCTGGTGCAAAGGAACGACAGAATACGGCGGCTTCTGGCGCGTTCCATTATAGTTTCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCCCCCGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCgggtgggcgggtggg                                                                                                                                                                                            >  2:174623/1‑286 (MQ=255)                                                                                                            tGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTc                                                                                                                                                                                       <  1:79089/298‑1 (MQ=255)                                                                                                               ccGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGCCTATGGTGCTGTTGTTCCTGCCGACGTTATTGAGCATTTTGCTTATCTGGTGCAACGGAACGAAAGAATACGGCGGCTTCTGGCTCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTAAGCATGTTGTTCCATACTGTCTCCGTTGTCCCCGCGGTCCTTGGCTGGGAAGTGGTGGGGatatcgcg                                                                                                                                                                                    >  2:315075/1‑291 (MQ=255)                                                                                                                            cTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGtgatgat                                                                                                                                                                       <  1:189000/298‑1 (MQ=255)                                                                                                                                                     ccGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGt                                                                                                                                              <  1:162478/298‑1 (MQ=255)                                                                                                                                                            ggCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCACAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTCTGGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTACGGTACGCATGCGGTTCCATACGGTCTTCGTTGTCGGCGCGGTCCTGGTCTCGGCCGCGGCTTCGCATTCCCCCCAGCGTGATGTTGACTCCACTTCCTGTGGTGAACCAGTCaaatc                                                                                                                                       >  2:230706/1‑296 (MQ=255)                                                                                                                                                              ccGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGcc                                                                                                                                     <  1:90296/298‑1 (MQ=255)                                                                                                                                                                     ggCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGCATTCACCGCAGCGTGATGATGACTCAACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTc                                                                                                                              >  1:173786/1‑298 (MQ=255)                                                                                                                                                                                    cGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAgg                                                                                                               <  1:301199/298‑1 (MQ=255)                                                                                                                                                                                                          tATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTCCATGATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGCTGTCAGCGCGTTCCTTCGCTGGGACGGGGTTGGTAATTCACCGCCGCGTGTTGATGACTCAACTTCCTGCGGTGCAGCGTTCAAACGCCAGGGCTCACAGCGCATGTTGGGGTTAGTGTGGCCTGTCgggttc                                                                                         >  2:422630/1‑295 (MQ=255)                                                                                                                                                                                                                gCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTgg                                                                                   <  1:270049/298‑1 (MQ=255)                                                                                                                                                                                                                  tgttgtTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCt                                                                                 <  1:315075/298‑1 (MQ=255)                                                                                                                                                                                                                    ttgttCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTgg                                                                               <  1:293628/298‑1 (MQ=255)                                                                                                                                                                                                                           tGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCg                                                                        >  1:400067/1‑298 (MQ=255)                                                                                                                                                                                                                              cGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCGACGGCTCACAGCTGCTGATAGGGTGAGACTGGGATGTTGGGGTGGCGTGGCTGGACCTggggtt                                                                     >  2:179223/1‑293 (MQ=255)                                                                                                                                                                                                                              cGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGttt                                                                     <  1:99600/298‑1 (MQ=255)                                                                                                                                                                                                                                     aTTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTc                                                              >  1:97695/1‑298 (MQ=255)                                                                                                                                                                                                                                       tGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGCATTCACCGCAGCGTGATGATGCCCCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCCCACCGCTGCTGTTAGGGCTACTCTGGGCTGTTGGGGTGGCTCGGCTGGACCTACGTTCCCTGCTctg                                                            >  2:378206/1‑298 (MQ=255)                                                                                                                                                                                                                                               ttGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCAc                                                    <  1:174623/298‑1 (MQ=255)                                                                                                                                                                                                                                                           tGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCCGCGCGTTCCTTGGCTGGGAAGGGGGGTGGAATTCACCGCAACGTGATGATGAACCCACTTGCTGGGGTGAAGCGTTCAAACGACACGGCCCACCGCTGCTGTGAGTGTGAGTCTGGGCTGTTGCGCTGGCGTGGCTGGATCTGCCTTTCCTGGTTTTGCTGGACTCGATTGtctcct                                        >  2:135308/1‑298 (MQ=255)                                                                                                                                                                                                                                                            ggaaaGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTtctc                                       <  1:52021/296‑1 (MQ=255)                                                                                                                                                                                                                                                             cAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCg                                      <  1:293068/298‑1 (MQ=255)                                                                                                                                                                                                                                                               aaGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGCTGCCTCCACTTCCTGGGGTGAAGCGTTCAAACGCCCCGGCCCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTGGGGATGGGGTGTCGGGGTCTCGGTTTCCTTTTCTGGGTGGCCCCGATTGTCTTTTCGtt                                    >  2:115972/1‑298 (MQ=255)                                                                                                                                                                                                                                                                        aaGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCaaa                                                                                                                                         >  2:175932/1‑188 (MQ=255)                                                                                                                                                                                                                                                                        aaGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCaaa                                                                                                                                         <  1:175932/188‑1 (MQ=255)                                                                                                                                                                                                                                                                                   ggcTTTTGGGGCGTTACATGATGGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCAGACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCgtttgttt                <  1:361997/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                 tACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGc  <  1:285643/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                                         |                                                                                                                                                                                                                                                                                                  CCGGTTCACCGTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTAC‑TGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGC  >  CP006584/1168106‑1168690

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑