Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	2,251,239	G→A	P28P (CCC→CCT)	LY180_10740 ←	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	2,251,239	0	G	A	96.8%	61.1 / ‑6.1	32	P28P (CCC→CCT)	LY180_10740	hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (0/1);  new base A (18/12);  total (18/14)
Fisher's exact test for biased strand distribution p-value = 4.19e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01

AGTTCGGTCAGGCTCATGGGATACAGTTCTGATGGCGGCCAGTGAAATATCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTGGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCTCCTTACCGTCCATCGTCAGCCGGAAATAGGTGCAGACCACGGAGATTT  >  CP006584/2250947‑2251515                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                      aGTTCGGTCAGGCTCATGGGATACAGTTCTGATGGCGGCCAGTGAAATATCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGttt                                                                                                                                                                                                                                                                                  >  1:222721/1‑298 (MQ=21) aGTTCGGTCAGGCTCATGGGATACAGTTCTGATGGCGGCCAGTGAAATATCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGttt                                                                                                                                                                                                                                                                                  <  1:41295/298‑1 (MQ=21)     cGGTCAGGCTGATGGGATACAGTTCAGGTGGCTGCCAGTGAAAGATCACTGCCACCTGGCCCAGAAGGCCATCGACCGAGAGATTTTTCGGGAACGTCACTGCGCGGGGTTCGGCGACAAACAACCGACCACCTTCCCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTtcatc                                                                                                                                                                                                                                                                              <  2:136938/298‑1 (MQ=11)       gTCAGGCTCATGGGATACAGTTCTGATGGCGGCCAGTGAAATATCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGCCCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCCCGGCAGCACCTTCATAAGTGCATCGACGTCGGGGTTTGCGCCCGCCGCCAGACCGTCACCCCCGCGCCTCCCGGCATTAGGttctctcga                                                                                                                                                                                                                                                                            >  2:143248/1‑291 (MQ=11)             ctcctggattACAGTTCGGATGCGGGCCGTTAGAGTAGCGCTGCCACATCCGCAATCAGGTCAGCGACCGAGAGATTTTTCGGGAACGGCACTGCGCCGAGTTCGGCGACAAAAAACCGGCCACCTGACCGGCCAGCGCCACAAGGTCAGTCAGTTCCAGTGCGGCGCCCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTGATCAGTGCATCGGCTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGAc                                                                                                                                                                                                                                                                      <  2:222721/289‑1 (MQ=11)               cATGGGATACAGTTCTGAGGGCGGCCAGTGAAATATCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCt                                                                                                                                                                                                                                                                    <  1:7725/298‑1 (MQ=21)                                                  tCACTGCCGCATCCGCCATCAGGTAGTCGACAGAAAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGGCCACCTTACCGGCCAGCGCCACCAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTg                                                                                                                                                                                                                                 <  2:400520/298‑1 (MQ=255)                                                  tCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGCCACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCCTGACCTGTTCGATAACCTGCGCCCCACGCTTCACCggcctt                                                                                                                                                                                                                                 >  2:35783/1‑294 (MQ=255)                                                                gCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATcac                                                                                                                                                                                                                   >  1:424619/1‑298 (MQ=21)                                                                           aTCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGt                                                                                                                                                                                                        >  1:145669/1‑298 (MQ=21)                                                                                cggagataTTTTGCGGGCACGTCACGGCACCGAGGTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATg                                                                                                                                                                                                   <  2:204248/296‑1 (MQ=16)                                                                                      gaTTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTtc                                                                                                                                                                                             <  1:284319/298‑1 (MQ=18)                                                                                                   cGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCCGTTCGATACCCTGCTCACACCGCTTGCCCGGGTTGTCCAGGGTATACCCATTTTTTTTTTTTATGGTTTTCACTCTTCTGAATc                                                                                                                                                                                >  2:72123/1‑298 (MQ=11)                                                                                                             ccGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGCGTTTGCGACCGCCGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGCTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑Acc                                                                                                                                                                     >  2:415696/1‑298 (MQ=18)                                                                                                                      gCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCa                                                                                                                                                            >  1:217630/1‑298 (MQ=18)                                                                                                                         aCAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGc                                                                                                                                                         >  1:24774/1‑298 (MQ=18)                                                                                                                                   gccccccTTACCGGCCAGCGCCACAAGGGCAGGCAGTTCCAGGGCGGCGACCCCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATg                                                                                                                                               <  2:217630/293‑1 (MQ=12)                                                                                                                                       accTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGaaca                                                                                                                                           >  1:405553/1‑296 (MQ=18)                                                                                                                                               ggCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACCGACACCGCGCCGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCGCACCCCGCTTGACAGGATTGTCCAGGGTATTCACATTTTCTTTGTTCAGGGTTTTCTGACTTCTGAATCGGGGTCACACGTGTC‑GCCAGCGCGCCCGGACGAAAATCACCGGc                                                                                                                                   >  2:209468/1‑298 (MQ=255)                                                                                                                                               ggCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGCCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTACTCAGTGCATCGACTTCGGAGTTTGCGACCTCAGCCAGACCGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTCACCTGTTCGATAACCTGCTCACCACGCTTGACCGGCTTGTCCATGGTAATCACATTTTCTTTCTCCATGGTTTTCTACCTTCTGACTCGGGGTTC‑ACCGCTCAGCCCGGCTTACCGGATCACACTCACAgga                                                                                                                                   >  2:376123/1‑297 (MQ=11)                                                                                                                                                      gcCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTAATCAGCCTGACCTGTTCGATAACCTGCTCACCACGCCTCACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACCTCTTAATCGGGGTTA‑ACCGGTCCGCCCAGCTACCCGGACGAAAAGCACAGGCAGATCtt                                                                                                                            >  2:142656/1‑298 (MQ=11)                                                                                                                                                                        tCCAGTGCGGCGACCCCTTGCTCGGTCAGCAGGCGTGGGGGGAGTGGCGGCGGCACCTTAATCAGGGCATCGACGTCGGAGGTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGTCCTGTTCGATAACCTGCTCACCTCGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAg                                                                                                          <  2:293555/298‑1 (MQ=11)                                                                                                                                                                                   gACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGc                                                                                               <  1:94485/298‑1 (MQ=17)                                                                                                                                                                                    aCCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGcc                                                                                              >  1:123744/1‑298 (MQ=17)                                                                                                                                                                                            cTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCt                                                                                      >  1:237754/1‑298 (MQ=17)                                                                                                                                                                                                                            gcaCCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGAcc                                                      >  1:123423/1‑298 (MQ=14)                                                                                                                                                                                                                             caCCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCATCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCa                                                     <  2:123744/298‑1 (MQ=14)                                                                                                                                                                                                                                cTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGTCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCt                                                  <  1:72123/298‑1 (MQ=14)                                                                                                                                                                                                                                     tCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCAGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCTCCTTa                                             >  1:65923/1‑298 (MQ=14)                                                                                                                                                                                                                                       aGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTAGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCTCCTTAcc                                           >  1:195318/1‑298 (MQ=14)                                                                                                                                                                                                                                                              gacccgaGCCCGACTGACGCCGTGCAGCGTCCCGTCATTTGGTTTGAGCAGCGTGACCTGTTCGATAACCTGCTGACCGCGCTTGACCTGATGGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACTGGTCAGCCCGGCTGACCGGATGCAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCTCCTTACCGTCCATCGTCAGCCGGAAATAgg                    <  2:393235/292‑1 (MQ=1)                                                                                                                                                                                                                                                                                ccggggcggCGTGCCGGTATTGGGTTTCATCGTCGTGACCTGTGCGGTAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTATTGGTTTTCTCACTTCTGGATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCTCCTTACCGTCCATCGTCAGCCGGAAATAGGTGCAGACCACGGAGAttt  <  2:368292/290‑1 (MQ=1)                                                                                                                                                                                                                                                                                                     |                                                                                                                                                                                                                                                                                      AGTTCGGTCAGGCTCATGGGATACAGTTCTGATGGCGGCCAGTGAAATATCACTGCCACATCCGCCATCAGGTCATCGACCGAGAGATTTTTCGGGAACGTCACTGCACCGAGTTCGGCGACAAAAAACCGACCACCTTACCGGCCAGCGCCACAAGGTCAGGCAGTTCCAGTGCGGCGACCTCCTGCTCGGTCAGCATCGGTGCCGTCATGCGCGGCAGCACCTTAATCAGTGCATCGACTTCGGAGTTTGCGACCGCAGCCAGACTGACACCGCGCAGCGTCCCGGCATTGGGTTTCATCAGCGTGACCTGTTCGATAACCTGCTCACCACGCTTGACCGGATTGTCCAGGGTAATCACATTTTCTTTGTTCATGGTTTTCTCACTTCTGAATCGGGGTTA‑ACCGGTCAGCCAGGCTGACCGGATGAAAATCACAGGCCGATATTGCGGCGGTGTTGCTCCAGCCGGTCGACGCCGTTCACCTTCTCAATCATGTTGATGGTGTCGATTTCGACCAGCTCCTTACCGTCCATCGTCAGCCGGAAATAGGTGCAGACCACGGAGATTT  >  CP006584/2250947‑2251515

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑