| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 1,213,485 | Δ7 bp | intergenic (+184/‑105) | LY180_05705 → / → LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 1,213,485 | 0 | T | . | 100.0% | 21.1 / NA | 6 | intergenic (+184/‑111) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (4/2); total (4/2) | |||||||||||
| * | CP006584 | 1,213,486 | 0 | C | . | 100.0% | 21.1 / NA | 6 | intergenic (+185/‑110) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base . (4/2); total (4/2) | |||||||||||
| * | CP006584 | 1,213,487 | 0 | T | . | 100.0% | 21.1 / NA | 6 | intergenic (+186/‑109) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (4/2); total (4/2) | |||||||||||
| * | CP006584 | 1,213,488 | 0 | G | . | 100.0% | 21.1 / NA | 6 | intergenic (+187/‑108) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (4/2); total (4/2) | |||||||||||
| * | CP006584 | 1,213,489 | 0 | T | . | 100.0% | 21.1 / NA | 6 | intergenic (+188/‑107) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (4/2); total (4/2) | |||||||||||
| * | CP006584 | 1,213,490 | 0 | G | . | 100.0% | 21.1 / NA | 6 | intergenic (+189/‑106) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (4/2); total (4/2) | |||||||||||
| * | CP006584 | 1,213,491 | 0 | T | . | 100.0% | 21.1 / NA | 6 | intergenic (+190/‑105) | LY180_05705/LY180_05710 | DNAse/PTS glucose transporter subunit IIBC |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (4/2); total (4/2) | |||||||||||
AATGGCTAAAACGAGTAAAGTTCACCGCCGAAAATTGGGCGGTGAATAACCGCGTTTGAAATATTGTGACATATGTTTTGTCAAAATGTGCAACTTCTCCAATGATCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTACTCTGTGTAATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTAAATCGCTGATGCTGCCGGTATCCGTACTGCCTATCGCAGGTATCCTGCTGGGCGTCGGTTCCGCGAATTTCAGCTGGCTGCCCGCCGTTGTATCGCATGTTATGGCAGAAGCAGGCGGTTCCGTCTT > CP006584/1213327‑1213762 ||||||| aatGGCTAAAACGAGTAAAGTTCACCGCCGACAATTGGGCGGTGAATAACCGCGTTTGAAATATTGTGACATATGTTTTGTCAAAATGTGCAACTTCTCCAATGATCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTAC‑‑‑‑‑‑‑AATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGCAGCACTCCCAATTATGCTTAAGACTGCATTTGCTAACCTGCAAAAGGTc > 1:168862/1‑298 (MQ=255) cACCGCCGAAAATTGGGCGGTGAATAACCGCGTTTGAAATATTGTGACATATGTTTTGTCAAAATGTGCAACTTCTCCAATGATCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTAC‑‑‑‑‑‑‑AATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTAAATCGCTGATGCTGCCgg < 1:577042/298‑1 (MQ=255) aCATATGTTTTGTCAAAATGTGCAACTTCTCCAATGATCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTAC‑‑‑‑‑‑‑AATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTAAATCGCTGATGCTGCCGGTATCCGTACTGCCTATCGCAGGTATCCTGCTGGGCGTCGGTTCcgc > 1:487449/1‑298 (MQ=255) aTCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTAC‑‑‑‑‑‑‑AATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTaaa > 1:543956/1‑200 (MQ=255) aTCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTAC‑‑‑‑‑‑‑AATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTaaa < 2:543956/200‑1 (MQ=255) aaacaaaTTGGCACTGAATTATTTTAC‑‑‑‑‑‑‑AATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTAAATCGCTGATGCTGCCGGTATCCGTACTGCCTATCGCAGGTATACTGCTGGGCGTCGGTTCCGAGAATTTCAGCTGTCTGCCTGCCGTTGGATAGAATGTTGTGCCAGAAGGAGgggggctggactt > 2:292075/1‑289 (MQ=255) ||||||| AATGGCTAAAACGAGTAAAGTTCACCGCCGAAAATTGGGCGGTGAATAACCGCGTTTGAAATATTGTGACATATGTTTTGTCAAAATGTGCAACTTCTCCAATGATCTGAAGTTGAAACGTGATAGCCGTCAAACAAATTGGCACTGAATTATTTTACTCTGTGTAATAAATAAAGGGCGCTTAGATGCCCTGTACACGGCGAGGCTCTCCCCCCTTGCCACGCGTGAGAACGTAAAAAAAGCACCCATACTCAGGAGCACTCTCAATTATGTTTAAGAATGCATTTGCTAACCTGCAAAAGGTCGGTAAATCGCTGATGCTGCCGGTATCCGTACTGCCTATCGCAGGTATCCTGCTGGGCGTCGGTTCCGCGAATTTCAGCTGGCTGCCCGCCGTTGTATCGCATGTTATGGCAGAAGCAGGCGGTTCCGTCTT > CP006584/1213327‑1213762 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |