Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	459,705	Δ1 bp	coding (137/276 nt)	LY180_02175 ←	transcriptional regulator

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	459,702	0	C	.	100.0%	203.7 / NA	46	coding (140/276 nt)	LY180_02175	transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base . (21/25);  total (21/25)

GTATGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAGGGAA  >  CP006584/459407‑459994                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                       gTATGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTAGCCGTTTGTCGGGGGTGCAACGTCAATTTCAACGAGTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGccc                                                                                                                                                                                                                                                                                                      <  2:610391/298‑1 (MQ=255)     ggCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGcccgaac                                                                                                                                                                                                                                                                                                  >  1:365698/1‑294 (MQ=255)        aaaCGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGcccgcacggc                                                                                                                                                                                                                                                                                               >  1:176017/1‑291 (MQ=255)         aaCGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCa                                                                                                                                                                                                                                                                                             >  1:398415/1‑298 (MQ=255)          aCGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAg                                                                                                                                                                                                                                                                                            <  1:611415/298‑1 (MQ=255)             ccGGTATGGGTGACTTTAATCAGTACTTCACCTTTTTTCGGTGGTGCAACGTCAAGTGCAACGATTTCCAGCGGTTTACCGGGAGAAAATGCAACGGCAGCACTTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTAGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGa                                                                                                                                                                                                                                                                                         <  2:324507/298‑1 (MQ=255)                       tGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTACTAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTAACTAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCCTTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATAACCCCGTTATCCGCG‑CCCGAACGGCacagcgcttttggag                                                                                                                                                                                                                                                                               >  2:525964/1‑284 (MQ=255)                                 gcactcTTCCCCCTTTTTCGGGGGCAGAGCGACAATTTCAACGGTTTTCCGCCGTTTGCCGGGAGGAAATGGAACAGCAGCACGTGGTTTTATCCTTCGCTTTTTCTCCATCTGGTAAGAGATTCAGCTATTTAAGATAGGCTAGAACCAGTTCAATAGTGTCGTCAACGGGTTGGCTGACTTCGCGGCTGGAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACgg                                                                                                                                                                                                                                                                     <  2:3090/293‑1 (MQ=255)                                    cACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCAt                                                                                                                                                                                                                                                                  >  1:278880/1‑298 (MQ=255)                                          tccTTTTTTAGGGGGTGCCACGCTAATTTCAACGCTTTCCGGAGGTTTCCCGGAGGAAAATGTAACGGAGGGACGGCATTGCATCGTTCGCCCATCCTCAAGATGGGAAAGGATTAAGGTATTGAAGCTAGGCTCGAACCAGTTCAAAAGTGTTGTCAACGGAGTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCTGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCa                                                                                                                                                                                                                                                           <  2:625077/297‑1 (MQ=255)                                                           cAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCg                                                                                                                                                                                                                                          <  1:565561/298‑1 (MQ=255)                                                              cctCATTTTCGACGACTTCTCGCGGGTTACCGGGAGCAAAGGCCACGGCATCACGTGTTTTCTGCTGTCGCTCTTCCTCAATTGTGTAATAGATTCAGCGATTTAAGATAGGCTCGAACCAGTGCGATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTc                                                                                                                                                                                                                                       <  2:99306/296‑1 (MQ=255)                                                               gTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTcc                                                                                                                                                                                                                                      <  1:190305/298‑1 (MQ=255)                                                                    tttCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGc                                                                                                                                                                                                                                 >  1:318450/1‑298 (MQ=255)                                                                     tgcgaCGATTTGCAGCCGTTTAACGGGAGCAAATGCAACGGCAGCTAGTGATTTCAACTCTCGCTCTTCCTACATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTGCAATATGGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCGGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCa                                                                                                                                                                                                                                <  2:612709/294‑1 (MQ=255)                                                                             tttCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTg                                                                                                                                                                                                                        <  1:233060/298‑1 (MQ=255)                                                                               tCCAGCGTTTTGCAGGGGGCAAATGGAAGGTCGGCACGTGATTTCATTTCCTACGTTTCCTCAGTAAGGTAATAGATTAAGCAATTTAGCATAGGCACGGAGCATGTTGATAGTGTCGTCAACGGATTGGCTGACTTCCCGGATGTAGCAGTCATTTCGGTCAACCGTTTCCCGGATATGGCTGTCAAGCACTGTTGCGATCAGGCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGcc                                                                                                                                                                                                                      <  2:176017/298‑1 (MQ=255)                                                                                ccAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTAGTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCATGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGccc                                                                                                                                                                                                                     <  1:103279/298‑1 (MQ=255)                                                                                      gTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAAt                                                                                                                                                                                                               >  1:56069/1‑298 (MQ=255)                                                                                                               agcaCGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCttt                                                                                                                                                                                      <  1:475920/298‑1 (MQ=255)                                                                                                                   cGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTAAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCCAGCACTTCTGCCATCAGCCCGTTCGCCGCG‑CCCGAACGGCAGCGATCTGTTCGCGTCTGGCAC‑GCACTCTCGCATCACCCTCCAGCTACCGTTCCAAAGCATCAGTACTCCTCCTGATACGACCAACACGGGCAAGGACCTTTttct                                                                                                                                                                                  >  2:29200/1‑298 (MQ=255)                                                                                                                     tGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTttcttc                                                                                                                                                                                >  1:253593/1‑298 (MQ=255)                                                                                                                               tctcGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGCACGGCAGCGATCTGTTGGAGGATGGCACCGCCTTA‑CGCAGTCCCCTCCAGCCACCGTTCACGATCATCAATCGGCCCGCCAATACGACCAACTCCGGCAAGGACACTTTTACTATCTTCCGGAg                                                                                                                                                                      >  2:87041/1‑298 (MQ=255)                                                                                                                                                atGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCAc                                                                                                                                                     <  1:5322/298‑1 (MQ=255)                                                                                                                                                atGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCAc                                                                                                                                                     <  1:69323/298‑1 (MQ=255)                                                                                                                                                 tGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCAcc                                                                                                                                                    <  1:594816/298‑1 (MQ=255)                                                                                                                                                        aGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTcatcat                                                                                                                                             <  1:513364/298‑1 (MQ=255)                                                                                                                                                            tCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGc                                                                                                                                         >  1:371071/1‑298 (MQ=255)                                                                                                                                                             cAGCGATTTAAGCTAGGCTCGAACCAGTTCAATAGTGTCTTCATCGGGTTGGCTGACTTCGCCGCTGTAGCAGTCATTACGGTCACACGTTTCCCGGATATGGCTTTCAAGCACTTCTGGCATCTGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTACAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCa                                                                                                                                        <  1:498062/298‑1 (MQ=255)                                                                                                                                                                         aTAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACta                                                                                                                            <  1:602196/298‑1 (MQ=255)                                                                                                                                                                                  aaCCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGt                                                                                                                   >  1:70086/1‑298 (MQ=255)                                                                                                                                                                                    ccAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTAt                                                                                                                 >  1:394557/1‑298 (MQ=255)                                                                                                                                                                                           attAGTGTCGTCAACGGATTGGCTGACGTCGCGGCTGTATCAGTCATTTCGGTCGAACGTTTGCCGTATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTATCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTatat                                                                                                          <  1:254935/296‑1 (MQ=255)                                                                                                                                                                                                                gCTGTCTTCGGGTCTAGAGCAGTCATTTCGGGCAAACGTTTCCCCGATATGGCTGTCAATCACTTCTGCCCTCAGCCCGTTAGCCGCG‑CCCGAACGTCCGCGATCGGTTGGAGTAGTGCACGGCAGTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCAGCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTGTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCtata                                                                                     <  2:394557/298‑1 (MQ=255)                                                                                                                                                                                                                  tGACTTAGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGt                                                                                   <  1:295265/298‑1 (MQ=255)                                                                                                                                                                                                                               gTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGga                                                                     >  1:331371/1‑298 (MQ=255)                                                                                                                                                                                                                                    aGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACATCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATa                                                                <  1:40187/298‑1 (MQ=255)                                                                                                                                                                                                                                                   aCGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGCACTCCAGGAAGGACCTTTTTCTTCTCTTCCGGAGCACTGGGCCTTTCGCACCTCATCATACGCACGCCACATCGCTTAGGGCGGACTGATAAACGTCAAAGCATACCCCCCTCTAG‑ATATAAAACATGGAGAAAAAAATGTacacgggga                                                 >  2:228240/1‑290 (MQ=255)                                                                                                                                                                                                                                                   aCGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGt                                                                                                                   <  1:43182/233‑1 (MQ=255)                                                                                                                                                                                                                                                   aCGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCCCACCTCATCATCTGCACGCAATATACTATAGGGGGGt                                                                                                                   >  2:43182/1‑233 (MQ=255)                                                                                                                                                                                                                                                    cGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATAAAATTTATCCGGTGaa                                                <  1:525964/298‑1 (MQ=255)                                                                                                                                                                                                                                                           cGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTTGAGTAAGGACCTTTTTCTTTTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATCCTATAGGGGGGTATGCTATATTGCAATTCATCCCCCCCTATAGTATATAACCA‑CGGCGCAGAAAATTTATCCGGAGAAATTGGtt                                         >  2:971/1‑297 (MQ=255)                                                                                                                                                                                                                                                                  ggCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAAc                                  >  1:232286/1‑298 (MQ=255)                                                                                                                                                                                                                                                                    cTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGATTACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGACTACTGGGCCTTTCGCACCTCATCATCTGCACGCAATATACTATATGGTGGTATACAATATGTCAATGCATACCCCCCTATAGTATACAACAC‑TGGAGAATAAAATTTAACCGGTGAAAGTGGtgcacaacaca                                >  2:317923/1‑288 (MQ=255)                                                                                                                                                                                                                                                                                    ccATCAGCCCGTTAGCCGCG‑CCCGCACGGCAGCGATCTGTTGGAGTATGGCACGGCATCC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACCACCAACTCCAGTAAGGACCTTTTTCTTCTCTTCACGAGCACTGGGCATTTCGCACCTCCTCATCTGCCCGCACTATACTATAGGGGGGGATGCTATATGTCACTTCATACCCCCCTATCGTCTATAACAC‑TGGCGAATAAAATTTAACCGGTGAATGTGGTAGGCAAACAAAGACGAAAGGGGGAGc                >  2:467957/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                    ccATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGGGTTCTGTTGGCGTAGAGAACGGCTGTC‑CGCATCACCCTCCAGCGAGCGTTCCAGAGCATCAATCTGCCCGCGAATACGACGAACTCGGGGAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGTATTTCGCACCTCATCATCTGAACGCAATATACGATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGc                <  2:398415/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                    ccATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGc                >  1:322434/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                         aGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCCCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCCACAGTATTAAAAAC‑TGGAGAATAAAATTTACCCGGCGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCGaacg           >  2:180442/1‑296 (MQ=255)                                                                                                                                                                                                                                                                                                  gCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCCGCATCTTCACCCAATATACTATAGGGGGGTAGGCTATATGTCAATGCATACCCCCCTATCGTAAATAACAC‑TGTGGAATAAAATTTATCCGGTGAATTTTGTCGGATAACAAAGAAGAAAGGGGGGCCAAACAGGTAGGGaa  >  2:639901/1‑298 (MQ=255)                                                                                                                                                                                                                                                                                                        |                                                                                                                                                                                                                                                                                                       GTATGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTC‑GGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACAC‑TGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAGGGAA  >  CP006584/459407‑459994

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑