| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006584 | 3345694–3346065 | 3377350–3376399 | 30335–31657 | 15 [14] | [14] 16 | ebgC–LY180_16025 | ebgC,LY180_15890,LY180_15895,LY180_15900,fadH,LY180_15910,LY180_15915,LY180_15920,LY180_15925,LY180_15930,LY180_15935,LY180_15940,LY180_15945,LY180_15950,LY180_15955,LY180_15960,LY180_15965,LY180_15970,LY180_15975,LY180_15980,LY180_15985,LY180_15990,LY180_15995,LY180_16000,LY180_16005,LY180_16010,LY180_16015,LY180_16020,LY180_16025 |
GTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATT‑C‑G‑AA‑CACCA‑A‑ACA‑ACTTGTT‑AATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTACATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT > CP006584/3345397‑3345963 | gTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCCGAAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGATGACTAAAAGCAATCCAATCTCATGCCAAATACTATTGTATAAATCTCGCTCTAAAGGCCGACAAAATCAGAGCTCGACACGGATGCATTGTACCCACCCGCCACCCAAAATCTACTCAGCGTCTGCAAAGGAGCCATGAGCTCTAGCAACTACCTTACATATTGAAATT‑C‑G‑AA‑CACCA‑ACACA‑AATTg > 2:446941/1‑298 (MQ=1) tACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTCTAAGAGACTGACTAAAAGCAATACAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCCCCACACGGACGCCTTGCCACCACTCGTAAACAAACATCTACTCAGCGACCGCAAAGGAGACATGGGCTCCAACAACTAACTTACCTGATGAACTTAC‑A‑AA‑CACCA‑A‑ACA‑ACTTTTT‑AACAGCTATTc > 2:179384/1‑298 (MQ=11) aCAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAACTCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACATAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTCTTGAAATT‑C‑G‑AATCACCA‑A‑ACA‑ACTTGTT‑Aataccatttag > 2:478036/1‑290 (MQ=9) tatGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGTCTATAAGACGCTGACTAAAATCAATCCAATCCCATGCCCAATTCTATTGTATAATTCTCGCCCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCCTGGTCCCCACCCGCCACCTAAAATCTACTCAGCGTAGGCAAAGGAGCGACGGGCTCTCACAACTCACTTACCAGGTCAAATA‑C‑C‑AA‑CCCCACA‑ACA‑ACTAGTC‑aaaacccagccacaga > 2:597696/1‑284 (MQ=1) atGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTACAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCCCTCTAAAGGCCGAAAAAATCAGCGCTCGAAACGGACTCATTGTCACCACCCCTACCCTAAAATCTACTCAGCGTCGGCAACGGACCCACGGATTCTACCAACTACCTTACCTGTTGAAATT‑G‑G‑AACCACCA‑G‑CCA‑ACTTGTT‑AATGTCTATTCGACGca > 2:518763/1‑297 (MQ=1) ggAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGCAATT‑C‑G‑AA‑CACCA‑A‑AAACACTTACT‑AATATCTATTCTAAGCAAATGCAGATTg > 2:278826/1‑298 (MQ=0) gAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACGCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCCGCGTCGGCAACGGAGCCATGGGTTCTCGCAACTAACTTACCTGTTGAAATT‑C‑G‑AACCACCA‑A‑ACA‑ACTTGTT‑AATACCTATTCGACGCAAATGccaatgtaaaaaa > 2:407295/1‑286 (MQ=1) ggAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAACAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTACAATCTACTCAGCGTCGGCAACGGAGCCACGGGTTATAGCAACTAACTTACCTGTTGAAATT‑C‑G‑AA‑CCCAA‑ACACA‑ACTTGTT‑AATATCTATTCGAACCGCATGCACATTGAAGACACCTTcag > 2:475082/1‑296 (MQ=1) ataaGCAACTTACATGCTATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGCCAGACTAAAATCACTCCAATCTCATGCCAAATTATATTGTATAAAACTCGCTCTACAGACCGAAAAAATCAGCGCTCGACAAAGACTCCTTTTCACCAACATTCAACTAAAATCTACTTAGCCCCGTCAAAGATGCCATGGACTCAAGCAACAACCTTACCTCTTGACATT‑CAA‑AA‑CACCA‑A‑ACA‑ACGTACT‑AATATATATTCGACTCGAAGACAAAATGCACAAACTATCCGAGACCTGa > 2:60337/4‑298 (MQ=2) ttACATGATATGTAATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACCCATTGTCACAACCCGTCACCTACAATCTCCTCCGCGTCGGCAAAGGACCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATT‑C‑G‑AACCACCA‑A‑ACA‑ACTTTTT‑ACTATCTATTCTAAGCAAATGAAAATTAAAGAAACCTCCCAAGACATAAAAAGTcacg > 2:71875/1‑295 (MQ=1) tttAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCATCACCAGTCACCTAAAATCTACTCAGCGTCTGCAAAGGAGCCCTGGGTTCTAGCAACTAACCTACCTGTTGCAATT‑C‑G‑AA‑CACCACA‑ACC‑ACTGGTT‑AATATCTATTCGAAGCGAATGCAGATTGAAGAAATCTTCCGAGAATTGAAAAATCTTCCCTACGGACTAGGCCTACGTCTCAGCCGAACg > 2:290247/1‑298 (MQ=1) aaaGGCCGAAAAAATCAGGCCCTGAACGGGGCTCATTGTCACCACCCATCACCTAAAATCAACTCAGGGGCGGCAAAGGAGCCATGGGTTATAGCAACTAACTTACCGGTTGAAATT‑C‑G‑AA‑CACCAGA‑ACA‑ACTGGGT‑AATATCTATTCGAAGCGAATGAAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCgg < 2:481180/298‑1 (MQ=1) cccaaaaCCTACTCAGCGTAGGCAAAGAGGCCATGGGTTTTAGAAACTATCTTACCTGTTGAAATT‑C‑GAAA‑CACCA‑A‑ACA‑ACTTGTT‑AATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAg < 2:90984/295‑1 (MQ=1) cggtggaaaaGGAGGCATGGGGTTGATCAATTAACTTACATTTTGAAATT‑C‑G‑AA‑AACCA‑A‑AAA‑AATTTTTGAATATCTAGTCGAAGCGGATGCTGAGTGAAGAAACGTTCCTAGATGTGAAAAGTCCTGCCTACGGACTGGTCCTAAGGCATAGCCGAACGAGAAGCTCAGAGCGTTGTGATATCATGCTGCTAATCGCCCTGATGATTCAACTAACATGTGGGCTTGCGGGCGTGCATGCTGAGAAACAAGGTTGGGACAAGCAGTTCCAGGCTAACACAGTCAGAAATCGAAACGt < 2:358140/291‑1 (MQ=1) gTTGAAAGA‑C‑GAAA‑CACCA‑A‑ACA‑ACTGGTG‑AAGAACTATTCGAGGCGAATGCAGATTGAAGGAACCGTCCGAGACTTGAAAGGTCCTGGCGACGGACTAGGCGTACGCCGTAGCCTAACGAGCAGCTCAAAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAGATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCAtt < 2:82021/298‑1 (MQ=1) | GTAAGAGGAAAAGTACAATATGCAGACCTAGGAGCGGAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATT‑C‑G‑AA‑CACCA‑A‑ACA‑ACTTGTT‑AATATCTATTCGAAGCGAATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTACATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATT > CP006584/3345397‑3345963 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |