Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0065841,372,5670GA27.3% 92.0 / 27.8 57W19* (TGG→TAG) LY180_06475hypothetical protein
Reads supporting (aligned to +/- strand):  ref base G (19/21);  new base A (7/8);  total (27/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.47e-01
Rejected as consensus: Frequency below/above cutoff threshold.

TCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACAATAATTATCATCATTCTTATTACCCATTTTTAATGAATTAAAGGGCTTTTAATAC  >  CP006584/1372276‑1372861
                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                       
tCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCtagctggc                                                                                                                                                                                                                                                                                                   >  1:569675/1‑298 (MQ=255)
 cccTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCg                                                                                                                                                                                                                                                                                                  <  1:436948/298‑1 (MQ=255)
       tatTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTAAACCACTCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGAAATGCCTTCTGGAAATCAGGAACCGCGCCGCGATCCTGAATTAAAAAGTAAAGACTGGCTGCCGGttttt                                                                                                                                                                                                                                                                                            >  2:280428/1‑298 (MQ=255)
           tataGGAT‑AATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAAGTTCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTgg                                                                                                                                                                                                                                                                                       <  2:94912/298‑1 (MQ=255)
            ataGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTgg                                                                                                                                                                                                                                                                                       >  2:191602/1‑298 (MQ=255)
                   aaaTTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAATATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCGCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGATGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGACCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCa                                                                                                                                                                                                                                                                                >  2:567016/1‑298 (MQ=255)
                           tGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTAGGTTTTGCACTTTTTTg                                                                                                                                                                                                                                                                        >  2:213856/1‑298 (MQ=255)
                             tAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTggg                                                                                                                                                                                                                                                                      <  1:34006/298‑1 (MQ=255)
                                   agtTTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTg                                                                                                                                                                                                                                                                <  2:163001/298‑1 (MQ=255)
                                    gtgtCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGt                                                                                                                                                                                                                                                               >  1:459968/1‑298 (MQ=255)
                                       tCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCGCATCTTAT‑AATTAATTACACCACTCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGTTTAGCAATGCCTTCTGGTAATCAGGAACCCACCCGCGATCCTGAATTAAAACGCAAAGCCTGGTTGCCGGTCTTTCTTGGTTCTCCCCTTTTCTGGGTGGTTggatc                                                                                                                                                                                                                                                            >  2:224624/1‑294 (MQ=255)
                                         tcatgaCCCCCCTCGCAAATTCCCTTTTTCAAATATCTATGTCAGGTCAAAAGATTGAATTATTCACTGGAGACTATTCGTAAATTCGCTTGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAAGCGTTCAACTTCTTGCTGATTAGTGCTGGCGATGATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTACAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCAc                                                                                                                                                                                                                                                          <  2:515627/293‑1 (MQ=255)
                                         tAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCAc                                                                                                                                                                                                                                                          >  1:180975/1‑298 (MQ=255)
                                             tACACGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTCGACTAAAGTTTCTTTAGGATTTGTCTCATCGCAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATAAGCAACCCCGCCGCGATCCTGAATTAAAACGTAAACCCTGCCTGGCGGTTTTTCTTGTTTCTGCACTTTTCTGGGTGGTTCTCGTAccgct                                                                                                                                                                                                                                                      >  2:467809/1‑298 (MQ=255)
                                              aCCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCActgctg                                                                                                                                                                                                                                                     <  1:191602/298‑1 (MQ=255)
                                               cccGCCTCGCAAATTCCAGTTTTCAAATATTTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGa                                                                                                                                                                                                                                                    >  1:121367/1‑298 (MQ=255)
                                                cagCCTCGCAAATTCCAGTTTTCAAATATCTAGTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGAt                                                                                                                                                                                                                                                   <  1:533932/296‑1 (MQ=255)
                                                                       aaaTATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTAt                                                                                                                                                                                                                            >  2:151816/1‑298 (MQ=255)
                                                                               gtttCAAGTAAAAATATTTAATTATTCACTGGGAACGATTCGTAAATTCGCTGGAGTTTTGACTAAAGTTTCTTTAAGTTTTGTCTCATCGTAT‑AATTAATTTAACCAATCGTTCAACGTCTTGCTTATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTATTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTc                                                                                                                                                                                                                    <  2:68703/297‑1 (MQ=255)
                                                                                        cAAAACTTTGGATTATTCCCTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCTATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAAc                                                                                                                                                                                                           <  2:121367/298‑1 (MQ=255)
                                                                                                      attCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCa                                                                                                                                                                                             <  1:556301/298‑1 (MQ=255)
                                                                                                          aCTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTAt                                                                                                                                                                                         <  1:325691/298‑1 (MQ=255)
                                                                                                           cTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATg                                                                                                                                                                                        >  1:520659/1‑298 (MQ=255)
                                                                                                             ggtaactaTTCGTAAATTCTGTTGATTTTTGTCTAAATTTTCTTTAGGATTTGTTTCATTGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGTTAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTc                                                                                                                                                                                      <  2:283930/291‑1 (MQ=255)
                                                                                                                gaCGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGc                                                                                                                                                                                   <  1:41866/298‑1 (MQ=255)
                                                                                                                 aCGATTCGTAAATTCGCTGGCTTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACAAATCGTTCAACGTCTTGATGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCACGTCGCGATCCTGAATTAAAACTTAAAGCCTGGCTGGAGGCTTTTCTTGTTTCTGCACTTTTCTGGGGGGTTGTCGCACTGCTGATTTGGACAGTGTTGGGATAACTATGGTTGGTACGGAGCAACCGGAGATGTAATCATTATTTCAgac                                                                                                                                                                                  >  2:640957/1‑296 (MQ=255)
                                                                                                                   gATTCTTACTTTCGATGTATTTTTGACGAAAGTTTCTTTATGATTTGTTTCATCGTTT‑AATTAATTAAACCAATCGTTCAACTTCTTGCTGTTACTTGATGGCGATTATATGATTTTATCAATTCCTTCTGGAAATCAGGACCCCCGCCGCGTTCCTGAATTAATACTTAAAGCCTTGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTTGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATTTCAGCATa                                                                                                                                                                                <  2:124678/298‑1 (MQ=255)
                                                                                                                    aTTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAg                                                                                                                                                                               >  2:386921/1‑298 (MQ=255)
                                                                                                                      tCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTg                                                                                                                                                                             <  1:656500/298‑1 (MQ=255)
                                                                                                                                gCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAAcc                                                                                                                                                                   >  1:257537/1‑298 (MQ=255)
                                                                                                                                     aTTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACACCGCCGCGATCCTGCATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCCCTGCTGCTTTGGAAAGTGTGGGGATAACTATGGTTGGTAAGGAGCAACGGGACTAGTCACCATTAGTTCAGCTTTTTGCCATAGAACCAgaaa                                                                                                                                                              >  2:230078/1‑298 (MQ=255)
                                                                                                                                             cTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACgg                                                                                                                                                      >  2:476737/1‑298 (MQ=255)
                                                                                                                                               aaaGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGa                                                                                                                                                    >  1:400075/1‑298 (MQ=255)
                                                                                                                                                      ttttAAGATTTGTTTAATC‑TATAAATTAATTAACACAATTGTTAAATGTTGTGCTGTTAAGTTATGGCTTTAATATGGGTTTAGCAATGCATTCTGGAAATCAGGAACCCCGCCTCGATCCTGAATTAAAACGTATATCCTGGTTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTAACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTcc                                                                                                                                             <  2:130344/297‑1 (MQ=255)
                                                                                                                                                                           at‑aATTAATTACACCATTCGTTCAACTTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGTGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTgg                                                                                                                        <  1:377936/298‑1 (MQ=255)
                                                                                                                                                                                ttaattaaACCAATCGTTTTACGTCGTTCGGTTAATTGTGGGGAATTATATGGGGTTACGAATTATTTCTGGAAATCAGAAGCCCCGCCGCGGTCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAAc                                                                                                                    <  2:459968/298‑1 (MQ=255)
                                                                                                                                                                                          cAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCgca                                                                                                          <  1:213856/298‑1 (MQ=255)
                                                                                                                                                                                               tttcagctgtttgttgATGAGTGAGGGCGATTATATGATGTTGGCAATTCCTTCTGGAAATCAGGACCCCCGCCGCGATCCTGAATTAAAACGTTAAGCCTAGCTGGCGGTTTTTCTTGGTTCTTAACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCgcagcagc                                                                                                     <  2:257537/288‑1 (MQ=255)
                                                                                                                                                                                                      gTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCtt                                                                                              <  1:224624/298‑1 (MQ=255)
                                                                                                                                                                                                      gTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCtt                                                                                              <  1:386921/298‑1 (MQ=255)
                                                                                                                                                                                                            cTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGa                                                                                        <  1:22371/298‑1 (MQ=255)
                                                                                                                                                                                                              gATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAAc                                                                                      >  1:630760/1‑298 (MQ=255)
                                                                                                                                                                                                                  aGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAgaaacgaaac                                                                                                                                                        <  1:493994/228‑1 (MQ=255)
                                                                                                                                                                                                                  aGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAgaaacgaaac                                                                                                                                                        >  2:493994/1‑228 (MQ=255)
                                                                                                                                                                                                                            aTTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGTGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAgat                                                                        >  1:95122/1‑298 (MQ=255)
                                                                                                                                                                                                                               atatGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAgatgat                                                                     <  1:467809/298‑1 (MQ=255)
                                                                                                                                                                                                                                  tGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAg                                                                  >  1:119442/1‑298 (MQ=255)
                                                                                                                                                                                                                                   gAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTACTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGCGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGc                                                                 <  1:216893/298‑1 (MQ=255)
                                                                                                                                                                                                                                            aaTGCCTTCTGGAACTCAGGAACCCCGCCGAGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGGTCTGCACTTTTCTGGGTGGTTGTAGCACTGCTGATTTGGAAACTTTGGGGTTAACTATGGTTGTTCCGGAGCAACGTGATTCTTCATCATTATGTCAGAATAGTGACAATGCACGAGCAACGAAACGGGAATGGTCCGTAAGTATTCCATACGATGGGCAACTAACAGCACCGCATCGAACCTTTATAGGACTGTTTTCTGAAGATGAGCATC‑CGaaaaaac                                                       >  2:204252/1‑297 (MQ=255)
                                                                                                                                                                                                                                              tGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACaataa                                                     <  1:115659/298‑1 (MQ=255)
                                                                                                                                                                                                                                                     tGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATCATGTCAGCATAGTGACAATGCACCAGAAACGAAACGGGAATGTTCCGTCATTATTCCAGACGACTGTCAACGAACAGCGCAGCAGCAACCCTTTGTAGAAATGCTTGCTTAAGACGAT‑AGCACGACAAAATAAttgcact                                              >  2:487113/1‑293 (MQ=255)
                                                                                                                                                                                                                                                       gAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTAGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACAATAATTAtcatca                                            <  1:476737/298‑1 (MQ=255)
                                                                                                                                                                                                                                                             aGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACGGGCAACTAACAGACCAAACACAAGACTTTATAGAACTGTTTGCTTAAGAATATCAGC‑AGAAACAAAAATTaatctcaacttta                                      >  2:45006/1‑286 (MQ=255)
                                                                                                                                                                                                                                                               gAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACAATAATTATCATCATTCttatt                                    <  1:609646/298‑1 (MQ=255)
                                                                                                                                                                                                                                                                    ccgccgCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTCTGGTTGGTCAGGCGCAACTGGAGTCGTCACCATTATGTCCGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTAGTTATTCCAGACAACTGGCAACTAACAGCGCAGCAGCAATCTTTTATAGAATTGTTTGCAGAAGATGACCAGC‑GGAAACAATATATATCATCATTCTTTTTAACCa                               >  2:276209/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                            aTCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGAAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCACC‑CAAAACAATAATTATAATCATTCTTATTACCCATTTTTAAt                       >  2:145627/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                                     tAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACAATAATTATCATCATTCTTATTACCCATTTTTAATGAATTAAAg              <  1:276209/298‑1 (MQ=255)
                                                                                                                                                                                                                                                                                                 ccTTGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACAATAATTATCATCATTCTTATTACCCATTTTTAATGAATTAAAGGGCTTTTAATac  >  1:651177/1‑298 (MQ=255)
                                                                                                                                                                                                                                                                                                    |                                                                                                                                                                                                                                                                                                       
TCCCTCATATTTATAGGGTAAATTACCTGTAAAGTAGTGTCTAATTACCCGCCTCGCAAATTCCAGTTTTCAAATATCTATTTCAGGTCAAAAGATTGAATTATTCACTGGAGACGATTCGTAAATTCGCTGGATTTTTGACTAAAGTTTCTTTAGGATTTGTCTCATCGTAT‑AATTAATTACACCAATCGTTCAACGTCTTGCTGATAAGTGATGGCGATTATATGAGGTTAGCAATGCCTTCTGGAAATCAGGAACCCCGCCGCGATCCTGAATTAAAACGTAAAGCCTGGCTGGCGGTTTTTCTTGGTTCTGCACTTTTCTGGGTGGTTGTCGCACTGCTGATTTGGAAAGTGTGGGGATAACTATGGTTGGTCAGGAGCAACTGGAGTCGTCACCATTATGTCAGCATAGTGACAATGAACCAGAAACGAAACGGGAATGTTCCGTCGTTATTCCAGACGACTGGCAACTAACAGCGCAGCAGCAAGCCTTTATAGAACTGTTTGCTGAAGATGATCAGC‑CGAAACAATAATTATCATCATTCTTATTACCCATTTTTAATGAATTAAAGGGCTTTTAATAC  >  CP006584/1372276‑1372861

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑