| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 1,505,743 | 2 bp→GT | intergenic (‑91/+19) | LY180_07195 ← / ← LY180_07200 | heat‑inducible protein/hypothetical protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 1,505,743 | 0 | A | G | 98.3% | 203.3 / NA | 59 | intergenic (‑91/+20) | LY180_07195/LY180_07200 | heat‑inducible protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (22/36); minor base T (1/0); total (23/36) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 3.90e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.91e-01 | |||||||||||
| * | CP006584 | 1,505,744 | 0 | A | T | 100.0% | 195.6 / NA | 59 | intergenic (‑92/+19) | LY180_07195/LY180_07200 | heat‑inducible protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (23/36); total (23/36) | |||||||||||
ACACATGCTGCCGGAAATCATCATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGAATGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAATAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGAATTACGTCGTTGGATTTATCTTCAAAGAATAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTGGCGTAACGGC > CP006584/1505452‑1506035 || acacATGCTGCCGGAAATCATCATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAg > 1:459527/1‑298 (MQ=255) cacaTGCTGCCGGAAATCATCATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAgg < 2:614819/298‑1 (MQ=255) gcCGGAAATCATCATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGc < 1:574137/298‑1 (MQ=255) gAAATCATCATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTAACGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGAGTTACAGCAATTTTGTCATTACTTACACATCCCGCAATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTATCAATTACAGTTTCTGTCACCGGGCTATTTTAAGAATAGAGGATGAAAGGTAAGTGGGAATTAACTGAATCAGCTCCCCCGGGTTGCAGGGGAGCGGCaata > 2:497474/1‑296 (MQ=255) atcatcATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTa > 1:382693/1‑298 (MQ=255) cagtggggcACCAAAGCTGAGGGCTGGCGGATGTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCa < 1:142998/290‑1 (MQ=255) ttttttCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCCTTGTGGTTCTCAATTACAGTTTCTGCCTCAGGGCTATTTTAAGCATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCCCCCCTGGGTTGCTGGGGAACGGCAAGCTTAAACCAgt > 2:437003/1‑298 (MQ=255) ttttttCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAgt < 1:8852/298‑1 (MQ=255) ttttttCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAgt < 1:624744/298‑1 (MQ=255) tCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAgttcg‑tt < 2:612083/298‑1 (MQ=255) aacAAAGCTGGTTTCTGGCGGATTTTTTTCGTTGGTCACGGGCTTTCCGTGTACGCTTTCCAGCACATAACGCTTAGTCTGTATCTGTTCGGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTGCTGTCTTCATTGTGGTTCTCAAGTACAGTTTCTGACTCAGGGCTATGTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGttcg‑ttcg < 2:488428/296‑1 (MQ=255) aaaGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGc < 1:171108/298‑1 (MQ=255) gttctggggtgATTTTTTTCGTGGGTTCAGGGCTTCACCTTTTCGCTTTCCCGCACAAAACGTGGATTCGTTGCCTGGCCTGCCGTTAACGCATTTTGTTCATTCCTTACACAGCCCGCCTTCAGCAGGCTGAGCGCAACGAGCGCGGCTACTTGCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTc < 2:464225/288‑1 (MQ=255) aTTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCTCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACCCAGGGCTATTTTAAGAATAGAGGCTGAAAGGTCATGGGGGATTATCTGATTCAGCCCCCCTGGGTTGCAGGGGACCGGCAAGTTTAAACCAGTTCC‑TTCGGGCAGGtttg > 2:74267/1‑297 (MQ=255) ggggAGTTTTATCGTTTGGCACGGGCTGACTGGTTACGCTTTCCAGCACAAAGCGGGGCATTTATAACTGTTCTGGAGTTACAGCAATTTTGTCATTACTTACACATCCCGACATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTGTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCtttt < 2:647463/296‑1 (MQ=255) gaggAGTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTACCAGCACAAAACGACGATGCTGTAGGTGTACTGGAGTTACAGCAATTTTGTCATTACTTACTCATCCCGCCATCAGACGACTTAGTGCAACGAGCGCGGCTACTTTCTTCATTGTGGTGCTCAATTACAGTTTCTGACTCAGTGCTATTTTAAGAATAGCGGATGAAAGGTCATTGGGGATTATCTGAATAAGCTCCCATGGTTGGCAGGGGAACGGCAAGATAAAACCAGTTAG‑TTAGGGCCGGTTTCGCCtttt > 2:442316/3‑298 (MQ=255) gCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTGGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCtttt < 1:434046/298‑1 (MQ=255) gCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCtttt < 1:644481/298‑1 (MQ=255) gCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCtttt < 1:328500/298‑1 (MQ=255) aTTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCa < 1:339796/298‑1 (MQ=255) ttttATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGa < 1:598466/298‑1 (MQ=255) tATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTAATTGGGGATTATCTTAATACGCTCCCTCGGGTTGCAGGGGAGCGGCAAGTTGACACCA‑TTCGTTTCGGGCAGGTTTCGCCTTTTTCCAgcatt > 2:187842/1‑294 (MQ=255) aTCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTTGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTCCAGTTTCTGACTCAGGGCTATTTTACGCATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCCCCGCTGGGTTCCAGGGGAGCGGCAAGATTAACCCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGAtgcc > 2:628089/1‑295 (MQ=255) ggTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGt > 1:655422/1‑298 (MQ=255) gTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGtt < 1:456669/298‑1 (MQ=255) aCGGGTTTACCTTTTACGCTTTGCAGAACAAAACGATGATGCTGTAACTGTTGTGGCGTGACAGCAATTTTTTAATTACTTACACATCCCGCCATCAGCGGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTg < 2:338217/298‑1 (MQ=255) gggCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCa > 1:287277/1‑298 (MQ=255) tACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTa < 1:424908/298‑1 (MQ=255) cTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAAt < 1:1638/298‑1 (MQ=255) caaccataacaCGATGATGTTTTAACTATTGTGGGTTTACATTAATTTTTTCATTCCTTTCACTTCCCACTCTCGGCAGGCTTAGCGCAACGAGCGCGGCTAATTTCTTCATGGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTg < 2:69353/288‑1 (MQ=255) gatgatGCTGTAACTGTACTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTTAGAGCTTct < 1:325943/298‑1 (MQ=255) acgtGTTATGGCATTACAGCAATTTGTGCCGTAATTCCTCCTCCCGCCATCAGCAGGCTTAGCGCAACGGGCGCGGCTACTTTCTTCATTGTGGTTCTCAAGTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGATGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGGTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGaa < 2:75782/295‑1 (MQ=255) cATTACTTACACATCCCTCCAACGGCAGGAGTCGCGAAACGGTGGTGGCTACTTTCTTAATAGTGGTTCTAAATGACTGTTTCTGACGCAGGGCTATGTTAAGAATAGAGGAGGAAAGGTCATTGGGGATTATCGGAATCAGCTCTCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCATTTCG‑GTCGGGCAGGTTTCGCCTTTTTCCAGAGTGCTTAAGTTTTGCAGCGTAGTCTGAGACATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTtg < 2:89524/298‑1 (MQ=255) acacATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TCCGGGCAGGTTTCGCCTTTTTCCAGATGGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGTTGTCAGGAATGCCTGTTGCCCGGTAAACAGCACGTTGTggcctgc > 2:538273/1‑294 (MQ=255) tCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTCAATCAGCTCCCCTGGGTTGCAGGGGAGAGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTCTTTCCAGATTTCTAAAGTTTTGCAGCGTAGTCTGAGAAATCCTGTTCAGCGCTTCTGCTGTAAGCAATGCCTGGCGCCCGGTAATCAGCACGTTGTGGCAGGCAGACAGCCGACgg > 2:160926/1‑298 (MQ=255) ttAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCa > 1:252431/1‑298 (MQ=255) ggCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCAcgtcgt < 1:497474/298‑1 (MQ=255) tttCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGCCGGAATACGTCATcc > 2:400821/1‑279 (MQ=255) tttCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATcc < 1:400821/279‑1 (MQ=255) cttcATTGGGGTGTTCAATTACAGTTTCTGACTACGGGCTATTTTAAGAAGAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCGGGGTGGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTAt < 2:655422/298‑1 (MQ=255) aTTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAACTACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCAAGTTGTTGCACGCAGCCAGGCGACGCAACACGTCATCCTGGAGCACGTCGTTGGATTTATCCTc > 2:576076/1‑298 (MQ=255) ttCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGaac < 1:236578/298‑2 (MQ=255) ttaaTTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGa < 2:287277/296‑1 (MQ=255) aaTTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATc > 1:30786/1‑298 (MQ=255) aTTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTAAGAGCTTCAGCTGTCAGCAATCCCTGGTGCCCGCGAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAAGACGTCGTCCTGGATCACGTCGTGGGATTTATCTTCaagaaacacaccc > 2:554716/1‑287 (MQ=255) cAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATaca < 1:74267/298‑1 (MQ=255) ggATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCTAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCaa > 1:58251/1‑298 (MQ=255) ggATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCaa > 1:249530/1‑298 (MQ=255) gTCATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGAt < 1:437003/298‑1 (MQ=255) tCATTGGGTATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTGTTGCAGCGTGGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGAtt < 2:382693/298‑1 (MQ=255) cATTGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGAttt < 1:399864/298‑1 (MQ=255) ttGGGGATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGAttttt < 1:75724/298‑1 (MQ=255) gggATTATCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCTGTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATCACCCACGACACAATTTTATGAtttttacg > 2:359786/1‑295 (MQ=255) aTCTGAATCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTc > 1:558997/1‑298 (MQ=255) tCAGCTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTgct < 1:350448/298‑3 (MQ=255) cTCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTgctgcct < 1:330209/298‑7 (MQ=255) tCCCCTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTgctgcctg > 1:619274/1‑291 (MQ=255) ccccTGGGTTGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGTGCAGGTTTCTCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTgctgcctga < 1:442316/298‑9 (MQ=255) ccTGGGTTGCAGGGGAGCGTCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAACAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGGATCACGTCGTTGGATTTATCTTCAAAGAACAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTgctgcctgaga > 1:212800/1‑288 (MQ=255) || ACACATGCTGCCGGAAATCATCATTTTTTCACCAAAGCTGATTTCTGGCGGATTTTTATCGTTGGTCACGGGCTTACCGTTTACGCTTTCCAGCACAAAACGATGATGCTGTAACTGTTCTGGCGTTACAGCAATTTTGTCATTACTTACACATCCCGCCATCAGCAGGCTTAGCGCAACGAGCGCGGCTACTTTCTTCATTGTGGTTCTCAATTACAGTTTCTGACTCAGGGCTATTTTAAGAATAGAGGATGAAAGGTCATTGGGGATTATCTGAATCAGCTCCCCTGGAATGCAGGGGAGCGGCAAGATTAAACCAGTTCG‑TTCGGGCAGGTTTCGCCTTTTTCCAGATTGCTTAAGTTTTGCAGCGTAGTCTGAGAAATACTGGTCAGAGCTTCTGCTGTCAGGAATGCCTGGTGCCCGGTAAATAGCACGTTGTGGCAGGCAGACAGGCGACGGAATACGTCATCCTGAATTACGTCGTTGGATTTATCTTCAAAGAATAGATCGCGTTCGTTCTCATACACGTCCATACCCAACGAACCAATTTTCTGATTTTTCAGCGCTTCAATTGGCGTAACGGC > CP006584/1505452‑1506035 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |