| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | CP006584 | 3345731–3346064 | 3377367–3376399 | 30336–31637 | 15 [14] | [14] 16 | ebgC–LY180_16025 | ebgC,LY180_15890,LY180_15895,LY180_15900,fadH,LY180_15910,LY180_15915,LY180_15920,LY180_15925,LY180_15930,LY180_15935,LY180_15940,LY180_15945,LY180_15950,LY180_15955,LY180_15960,LY180_15965,LY180_15970,LY180_15975,LY180_15980,LY180_15985,LY180_15990,LY180_15995,LY180_16000,LY180_16005,LY180_16010,LY180_16015,LY180_16020,LY180_16025 |
GAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGA‑A‑CACCA‑A‑A‑CA‑A‑CTTGTTAATATCTATTCGAAGCG‑AATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTACATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAG > CP006584/3345433‑3346014 | gAAAAATGAAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTATAGGCTATAAGAGGATGACTAAAAGAAATCCAATCTCCTGCCAAATGCAATTGTATAAATATAGCTCTAAAGTCCGAAAAAATCAGCGCTCGACAAGGACTACTTGGCACCACCCGTCAACGAAAATCTACTCAACGACAGAAACGGAGACACTGGTTCTAACAACTAACTTACATGTAGACATTACA‑A‑CAACA‑A‑ACCA‑A‑CTCATTACAATCTATTAGAGTCA‑AAACAAGATTGAAGTAAc > 2:321615/1‑299 (MQ=0) aCTGGAAACCTATCAGCAACTTACATGATCTGTCATCTAGTCACCCAAAGACTTTAGGCTCTAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCAAAAAAATCAGCGCTCGACACGGACTACTTGTCACCAACCATCACCTAACATCTACCCCACGTCGCGAAAGGCGCCATGGGTTCTAGCAAATCACTTACCCGTAGACATTCGA‑A‑CACCC‑A‑A‑CA‑ACCTTGTAAAAATCTCTTCTACTCC‑AATTCACATTGCACAAACCtac > 2:202622/1‑297 (MQ=1) cTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGAATTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTAGCTCTAAAGGCCGAAAAAATAAGCGCTCGACACGGACTCATTTTCAACACTCGTCACCTAAAATCTAATCAGCGTCGGCAAAGGAGCCATCGGTTCGTGCAACTAACTTACATGTTGACATTCGA‑ACCACCA‑A‑A‑CA‑A‑CTTGTAAATATCACTTCAATGCG‑AATGCAGCTTGACGAAACCTTcc > 2:265329/1‑299 (MQ=1) tGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCCCCCGTCACCTAAACTCTACTCAGCGTCGGCAACGGAGCCATGGATTCTAGCAACTAACTTACCTGTTGAAATTCGACC‑CACCA‑A‑A‑AA‑A‑CTTGTTAATATCCATTCGAAGCA‑CATGCCGAATGAAAAAACCCTCCg > 2:397495/1‑299 (MQ=1) ggAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAACATCATCGCTCGACACGGACTCATTTTCATCAACCGACACCTAAACACTACTCAGCGCCGGCAAAGGAGCCAAGGGCTCTAGCAACTAACCTACATGTTGACATACGA‑AGCACCA‑A‑A‑CA‑C‑ATTGTTAAGAGTAATTCAAAGCA‑AATGCCAATCAAAGAAACCTTccaa > 2:179887/1‑297 (MQ=11) aaCCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAATGAGCCATGGATTCTAGCAACTAACTTAACGGTTGAACTTCGA‑ACCACAA‑A‑A‑CA‑A‑CTGATTAATATCCATTCGAAGCG‑AATGCAGATTGAAGAAAACTTCCGacac > 2:23345/1‑299 (MQ=1) tACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCAGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGAGCCGGCACAGGAGCCATGGGTTCTCTCAACTAACTTCACTGTCGAAATTCCA‑ACCACCA‑A‑A‑CA‑A‑CTTGTTAATATCTTTTCTAAACGAAATGCA‑CTTAAAGAAACCTTCCAAAACTTGATAATTCCTccc > 2:612857/1‑299 (MQ=1) aTGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAACAGGCTGACTAAAAGCAATCAAATCTCACGCCAAATTCTATTGTATAAATCTCGCTGTATAGACCGAAAACATCAGCGCATGACAAGGACGCATTGTCACCCCCAGTCAACTAAAATCTAATTCACGTCGGCAAAGGAGCCATCGATTCAAGCAACTAACTACCTTGTTGACATTCGA‑A‑CCCCA‑ACA‑CA‑A‑CTTATAAATACCACATCGAAGCC‑AACACTCATATAAGAAACCTGCCAAACGGTGAACAGTCCTGCCAAc > 2:509017/1‑299 (MQ=0) aaaGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAAGCCGAAAAAATCAGAGCTCGACACGGACTCATTGTCACCACCCGACACCTAAAATCTACTAAGCGTCGGCAAAGGAGCCCTGGGTCCTAGCAACTAACTTCCCTGGTGAAATTCGA‑A‑CACCACA‑A‑CA‑C‑ATTTGTAATACCACTTTGAAGCA‑AATGCCGATTTAAAAAACATTACCACACTTGAAAACGTCTACCTACAGACTAggacacacgcacaaac > 2:20613/1‑285 (MQ=1) aaGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATACTATTGTATACATCTCGATCTAAAGGCCGAAAAAATCAGCCCTCGAAACGGACTCATTGTCACCACCCGTAACCAAAAATCGACTCAGCGACGGAAACGGAGCCATGGATTCTACCAACTAACTACACTGGTGAAATTCGA‑A‑CACCC‑A‑A‑CACA‑CTTGTTAATATCTATTCTAAGTG‑AATCAAGATTAAAGAACCATTCCTAGACTTGACACGTCATGCGTACGGAATAGGCGTACGCAATAGcac > 2:122332/1‑297 (MQ=1) caatccaatcTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGA‑A‑CACCC‑A‑A‑CA‑A‑CTTGTTAATATCTATTCGAAGCG‑AATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCAtgct < 1:386583/299‑1 (MQ=11) caaGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGA‑ACCACCA‑A‑A‑CA‑A‑CCTGTTAATACCTATTCGAAGCG‑AATGCAACATGCAGACACCTTCCGAGACCTCAAACGTCCTGCCTACGGATCTGGCCTGCTCCATAGCCCAACCAACAGTCCAGCGCGTGTTGATATCCAGCTGCTCATCCCCCACATACTTACACTAACCTTTAGGCTGGCggg > 2:551492/2‑299 (MQ=1) gagcaggcgtggtAGCAACTAACTTACCTGTGGAAGTGCGC‑A‑AACCA‑A‑A‑GACA‑CTTGTTAATATCTATTGGTAGCG‑GAAGCAGATTGAAGAAACCTGGCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCAGAGCCGAACGAGCAGCTCAGAGCGTTTTGGTATCATGCTGCTAATCGCCCTGATGCTTCAAGTAACATGTTGGCTTGCGGGCGTTCATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGtg < 2:375640/287‑2 (MQ=1) tGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTACATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACCTACTCTCAACAATTCGCTTAGGCATGGAAGTTTTTCGGCAATCTGGCTAACCAAAAACCAGGGCAGACATAACCGTGGcctcacacctacaa > 2:313720/1‑286 (MQ=11) tgaggttGAAGAAACCTTCCAAAAGTTGAAACGTCCTGCCGATGGACTAGGCCTAGGCAATAGCCTGACGAGCATGTCGGGGCGTTTTGATATCATGCTGCTAATCGCCCTGTGGCATTAAGTAACATGTTGGCTTGCGTGCGTACATGCTCAGGAAAAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAATCGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTGGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAg < 2:536419/294‑1 (MQ=11) | GAAAACTGGAAACCTATCAGCAACTTACATGATATGTCATCTAGTCACTCAAAGACTTTAGGCTATAAGAGGCTGACTAAAAGCAATCCAATCTCATGCCAAATTCTATTGTATAAATCTCGCTCTAAAGGCCGAAAAAATCAGCGCTCGACACGGACTCATTGTCACCACCCGTCACCTAAAATCTACTCAGCGTCGGCAAAGGAGCCATGGGTTCTAGCAACTAACTTACCTGTTGAAATTCGA‑A‑CACCA‑A‑A‑CA‑A‑CTTGTTAATATCTATTCGAAGCG‑AATGCAGATTGAAGAAACCTTCCGAGACTTGAAAAGTCCTGCCTACGGACTAGGCCTACGCCATAGCCGAACGAGCAGCTCAGAGCGTTTTGATATCATGCTGCTAATCGCCCTGATGCTTCAACTAACATGTTGGCTTGCGGGCGTACATGCTCAGAAACAAGGTTGGGACAAGCACTTCCAGGCTAACACAGTCAGAAATCGAAACGTACTCTCAACAGTTCGCTTAGGCATGGAAGTTTTGCGGCATTCTGGCTACACAATAACAAGGGAAGACTTACTCGTGGCTGCAACCCTACTAG > CP006584/3345433‑3346014 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 10 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |