Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	1,168,401	C→A	S606* (TCG→TAG)	LY180_05445 →	glucosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	1,168,401	0	C	A	96.5%	189.8 / NA	58	S606* (TCG→TAG)	LY180_05445	glucosyltransferase
Reads supporting (aligned to +/- strand):  ref base C (1/1);  new base A (27/29);  total (28/30)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGCCGT  >  CP006584/1168116‑1168693                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                     gTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGaa                                                                                                                                                                                                                                                                                         >  1:120783/1‑299 (MQ=255)        gtTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTTCTGCTGGAAGTGCttt                                                                                                                                                                                                                                                                                  <  1:286611/299‑1 (MQ=255)           ccTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTACTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCtttttt                                                                                                                                                                                                                                                                               <  1:237344/299‑1 (MQ=255)            cTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTc                                                                                                                                                                                                                                                                              >  1:496815/1‑299 (MQ=255)                  ggctttatttCTTATCTCTCCTCTCCGCTGTGTTTTATGTTCCTCGCTCTCTCTACTGCATTGCAGGTAGTACTTGCGTTGACCGAACCGCAATACTTCCTTCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGTTGGCGATTGCACTTTTTGCTTCGACTATGTTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGtgct                                                                                                                                                                                                                                                                        <  2:164050/290‑1 (MQ=255)                         tGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCt                                                                                                                                                                                                                                                                 >  1:431736/1‑299 (MQ=255)                                                            cTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGt                                                                                                                                                                                                                              <  1:440244/299‑1 (MQ=255)                                                               gcgcTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAg                                                                                                                                                                                                                           <  1:57566/299‑1 (MQ=255)                                                                 gcTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGACGTTATTGCGCATTTTGCTTATCTGGTGCCAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTCCCTTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCCTGCTGTTCCATCCGGTCGTCGTTTTCAgcg                                                                                                                                                                                                                         >  2:627642/1‑299 (MQ=255)                                                                       tACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTcc                                                                                                                                                                                                                   <  1:650728/299‑1 (MQ=255)                                                                            cATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGCAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGCACGAAAGAATACGGCGGCTTCTGGCGCGTTACACTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCCCCCGTACTCCTGCTGTTCATGAATGTCTTCGTTTTCCGCCGCTTCCTGGGc                                                                                                                                                                                                              >  2:618734/1‑299 (MQ=255)                                                                                gCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTggg                                                                                                                                                                                                          >  1:225542/1‑299 (MQ=255)                                                                                    gtagtaCATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGGTCTTTTTTCCGTGCTGCTGGCCCCGGTACGCATGCGGTTCCGTACGGTCTTCGTTTTCTGCGCGTCTCTTGGGTGGGATgt                                                                                                                                                                                                      >  2:46507/1‑299 (MQ=255)                                                                                         aCATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGgtgt                                                                                                                                                                                                 >  1:297905/1‑299 (MQ=255)                                                                                          cATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGtgtg                                                                                                                                                                                                >  1:15009/1‑299 (MQ=255)                                                                                            agCGTTGGCGGAGCCGCAGTACTTCCTGCAGCCGGGGCAGTTGTGCCCGGGGTGGGCGCAGTGGGGGGCGGAGCTGGCGGTTGTACTTTGTGCGTGGACTATGGTGGTGTTGGTCCTGGCGAAGTTATTGAGCAGTTTGCTTATCTGGTGCAAAGGGACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGGGCTGCTGGCTCCGGTACGCATGCGGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGa                                                                                                                                                                                              <  2:519138/298‑1 (MQ=255)                                                                                              cGTTGACCGAACCGCACTACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACGTTATAGTTGCTGCTGGAAGTGCTTTTTTCCTAGCTGCTGGCTCCGGTACGCATGCTGTTCCATCCGGTCTTCGTTGTCAGCGCGTTCCTTGCCTGGGagttgcggggcaat                                                                                                                                                                                            >  2:474962/1‑286 (MQ=255)                                                                                              cGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAAt                                                                                                                                                                                            >  1:261055/1‑299 (MQ=255)                                                                                                 tGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCa                                                                                                                                                                                         >  1:82293/1‑299 (MQ=255)                                                                                                          cGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGt                                                                                                                                                                                <  1:576906/299‑1 (MQ=255)                                                                                                            cAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCCGGTGCAAAGGAACGCAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATTCGGCCTTCGTTGTCAGCCCGTTCCTTGGCTGGGACGTGGTGTGGGATCCCCCGcgcggtgt                                                                                                                                                                              >  2:62979/1‑292 (MQ=255)                                                                                                                aCTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGCACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTTCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTGGGCTTGGACGTGGTGGGGAATTCACCGccccggcatcat                                                                                                                                                                          >  2:380153/1‑288 (MQ=255)                                                                                                                    ccTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCCGCCCGTTCCTTGGTTGGGAAGTGCGGGGGAATTCACCGCAGCGgcatgatgccc                                                                                                                                                                      >  2:315431/1‑296 (MQ=255)                                                                                                                                  aGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTCCGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGGGGTGTGGAATTCACCGCACCGTGTTGATGACCCACCTTCCTggggg                                                                                                                                                        >  2:118773/1‑298 (MQ=255)                                                                                                                                                            cGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCGGTTGTTCATGCCGAAGTTATTGAGCTTTTTGATTATCTGGTGCAAAGGAACGAAAGAATACGGCGGTTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAGTTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTcaca                                                                                                                              <  1:21538/299‑1 (MQ=255)                                                                                                                                                             gTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAg                                                                                                                             >  1:53991/1‑299 (MQ=255)                                                                                                                                                                    gCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGt                                                                                                                      <  1:262908/299‑1 (MQ=255)                                                                                                                                                                      tgcggattggctttttgGGTTCGACTATGGTGCGGTGTTTCCTGCCGAAGTTATGGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTa                                                                                                                    <  2:297905/287‑1 (MQ=255)                                                                                                                                                                        gCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAgg                                                                                                                  <  1:187287/299‑1 (MQ=255)                                                                                                                                                                          gATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGt                                                                                                                <  1:205828/299‑1 (MQ=255)                                                                                                                                                                               cACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAgtg                                                                                                           >  1:325563/1‑299 (MQ=255)                                                                                                                                                                                     ttGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCt                                                                                                     <  1:46507/299‑1 (MQ=255)                                                                                                                                                                                      tGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTg                                                                                                    <  1:267919/299‑1 (MQ=255)                                                                                                                                                                                         ttCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTg                                                                                                 <  1:310580/299‑1 (MQ=255)                                                                                                                                                                                              cTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGGTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCATTTCCTGGGGTGAAGCGTCGAAACGACCCGGCTCACCGCGCCTGTTCGGGTTAGGGTGGGCTGTgggggga                                                                                            >  2:80678/1‑296 (MQ=255)                                                                                                                                                                                               tATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGATGCTGTTAGGGTTAGTGTGGGCTGTTGGGATgg                                                                                           >  1:464244/1‑299 (MQ=255)                                                                                                                                                                                                aTGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATgga                                                                                          >  1:395025/1‑298 (MQ=255)                                                                                                                                                                                                    tGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTgg                                                                                      <  1:231420/299‑1 (MQ=255)                                                                                                                                                                                                     gCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGc                                                                                     <  1:283482/299‑1 (MQ=255)                                                                                                                                                                                                                         tATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTc                                                                 <  1:627642/299‑1 (MQ=255)                                                                                                                                                                                                                                  ttttGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCa                                                        <  1:618734/299‑1 (MQ=255)                                                                                                                                                                                                                                       cTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGAt                                                   >  1:348194/1‑299 (MQ=255)                                                                                                                                                                                                                                        gtgtggaggggaagggAACGAAAGAGTTGTGCGGGTCGTGGCGCGTGACGTTAGCGTTGGTGCTGTCAGGGCTTTTTTCCGTGCTGGGGGGTGCGGGTCGAAGTCTGTTTCATACGGGTTTGGTGGTGAGCGCGTGCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGGGAGGAGGACTCCACTGCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGAtt                                                  <  2:573837/285‑1 (MQ=255)                                                                                                                                                                                                                                           tCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGtc                                               >  1:525306/1‑299 (MQ=255)                                                                                                                                                                                                                                               gTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAg                                                                                                                             <  1:535661/217‑1 (MQ=255)                                                                                                                                                                                                                                               gTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAg                                                                                                                             >  2:535661/1‑217 (MQ=255)                                                                                                                                                                                                                                                tGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTtctc                                          <  1:118773/299‑1 (MQ=255)                                                                                                                                                                                                                                                       gAACGCAAGGATCCGGCGGCTTCTGGTGCGTTCCGTTTTAGTTTCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATTCGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATc                                   <  2:325563/299‑1 (MQ=255)                                                                                                                                                                                                                                                          cGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCTGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTg                                >  1:1226/1‑299 (MQ=255)                                                                                                                                                                                                                                                          cGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTg                                <  1:173393/299‑1 (MQ=255)                                                                                                                                                                                                                                                              aGAATACGGCGGCTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCAc                            >  1:601565/1‑299 (MQ=255)                                                                                                                                                                                                                                                                aaTAGGGGGGGTTCTGGCGCGTTACATTATAGTTGGTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCg                          <  2:525306/299‑1 (MQ=255)                                                                                                                                                                                                                                                                         gcTTCTGGCGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCg                 <  1:315431/299‑1 (MQ=255)                                                                                                                                                                                                                                                                          tttCTGGAGCGTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCgg                <  1:483774/298‑1 (MQ=255)                                                                                                                                                                                                                                                                                  gcgTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTcc        >  1:71091/1‑299 (MQ=255)                                                                                                                                                                                                                                                                                   cgTTACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCa       <  1:187317/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                     ttACATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGc     <  1:52786/299‑1 (MQ=255)                                                                                                                                                                                                                                                                                        cATTATAGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCCCGGCTCACAGCTGCTGTTAGGGTTGGTGTGGGCTGTTGGGATGGCGTGGCTGGACCCGCGTTTCCTGTTCTGGCTGGCACCGATTTCCTTCTCGTTGATCCTGTCCCCGTTTGTTTCGGTGATTTCCAGctgg  >  2:268464/1‑296 (MQ=255)                                                                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                                                                                     GTGCGGTGTTCCTGACGGGCGTGATGTCTTATCTCTCCGCTCCGCTGTGGTTTATGTTCCTCGCGCTCTCTACTGCATTGCAGGTAGTACATGCGTTGACCGAACCGCAATACTTCCTGCAACCACGGCAGTTGTTCCCGGTGTGGCCGCAGTGGCGTCCTGAGCTGGCGATTGCACTTTTTGCTTCGACTATGGTGCTGTTGTTCCTGCCGAAGTTATTGAGCATTTTGCTTATCTGGTGCAAAGGAACGAAAGAATACGGCGGCTTCTGGCGCGTTACATTATCGTTGCTGCTGGAAGTGCTTTTTTCCGTGCTGCTGGCTCCGGTACGCATGCTGTTCCATACGGTCTTCGTTGTCAGCGCGTTCCTTGGCTGGGAAGTGGTGTGGAATTCACCGCAGCGTGATGATGACTCCACTTCCTGGGGTGAAGCGTTCAAACGCCACGGCTCACAGCTGCTGTTAGGGTTAGTGTGGGCTGTTGGGATGGCGTGGCTGGATCTGCGTTTCCTGTTCTGGCTGGCACCGATTGTCTTCTCGTTGATCCTGTCACCGTTTGTTTCGGTGATTTCCAGCCGT  >  CP006584/1168116‑1168693

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑