| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 1,464,821 | A→G | intergenic (+486/‑118) | LY180_06955 → / → LY180_06960 | hypothetical protein/regulatory protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 1,464,821 | 0 | A | G | 97.8% | 147.8 / NA | 45 | intergenic (+486/‑118) | LY180_06955/LY180_06960 | hypothetical protein/regulatory protein |
| Reads supporting (aligned to +/- strand): ref base A (1/0); new base G (26/18); total (27/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 | |||||||||||
GATGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCAGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTT > CP006584/1464532‑1465096 | gATGGTGACTGGTTGGTGTGTTCCATTTCTACAGAAAAAAATCCCAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTGTTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAac < 2:593306/299‑1 (MQ=255) ggTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGATGTCGTTCTGGTTCTCATATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCTCCTTTCTGATTGATTTTATTTTGGCGAGGTTACGGGGGTTAAGTAGAGTTGTTGCGGGTGCTTTCGGCTATCTGTCTCGGGCAGGAACAcc > 2:213187/1‑299 (MQ=255) ttgttgTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAg < 1:264628/299‑1 (MQ=255) gttgtGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGAt < 1:452397/299‑1 (MQ=255) aaacaaaaaaaaTCACAGAAACTATACCCAATATTTGCTTTGAATCAGTGACGAGACATCCTCATTTTTATCATGACTGGTGTACGTCCAATACAGGATGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAg < 2:447351/291‑1 (MQ=255) aaatacaaGAAACTATCCCCATTAGTTGCATTGAATCACTAGCGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGGGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTa < 2:306762/292‑1 (MQ=255) acaGAAACTATACCCAAGAGTTGCATTGAATCACTGACGAGACATCATCATATTTATCAGGAATGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTCCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTCTATTGGCGAGGTGACGGGGGTGACGTAAAATTGGTTCGGGTGCTGGAGGCTATCTGTCCGGTGCATCAACACCAAACAGTAGATAGAGAAACCACCCAGTTAACaatcatact > 2:531940/1‑291 (MQ=255) gAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCg < 1:550286/299‑1 (MQ=255) taCCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAACTATTGCGGCGGTAATGGCCATTTATTGTCTTGCTGTGGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGGTAAGAAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCCCGGGCATGAACACCAAAAGGCAAAACAAGAAAAGGCCCAGCTAACATCAcccctcacgcaaaca > 2:273534/1‑285 (MQ=255) aCCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTTTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCGGTTGTTCTTATGTATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGCAAAGACg > 1:342851/1‑299 (MQ=255) aTAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTaa > 1:616234/1‑299 (MQ=255) cgagctaTCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTTATTGATTTTATATTGGCGAGGTGACGGGCGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCt < 1:186683/293‑1 (MQ=255) cGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCt > 1:139147/1‑299 (MQ=255) cATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCg > 1:609281/1‑299 (MQ=255) tatTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATag < 1:213187/299‑1 (MQ=255) atTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTTCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCCATATATTGTCTTGCGGTTGTTCTTATGGATCGCCTTTCTGATTGATTGTATATTGGCGAGGTGACGGGGGTTAAGTAGAATGGCTGCGGGTGCTTGAGGCATTATGTCTCAGGCATGACCACCAAAAGGCCGAGAGAGAAAAGCCCAAGTTACCATTACGCCTCCGGCAAGCAGCTGAAAATTACATCT‑AGGCCATATCAATgagcaaccgcaa > 2:495040/1‑288 (MQ=255) ttATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAgaga > 1:506403/1‑299 (MQ=255) tCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTa < 1:624548/299‑1 (MQ=255) cAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATAGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTAGGGCATGAACAACAAAAGGCCGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAAACGATTAACATTA‑ATCAGAGGCCACATACATGCGGCACATAGAGATTac > 2:459173/1‑298 (MQ=38) aGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATGGTCTGGCTGTTGTTCTTATGGATCGCCTTGCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGAGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATCGAGAAAAGCCCCAGTTAACATTACTCGTCCGGCAAGACGCTTAACATTA‑CTCTGAGGCCATCTCTATGCGCCCCATAGACAttcga > 2:553983/1‑296 (MQ=255) tACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGc > 1:348341/1‑299 (MQ=255) gaggtggtggttttgTGCTGGTTGTCATATGTGCGTTGTGTTTTGCGGCTGTAATGGCAATTTATTGTTTTGTTGGTGTTTTTATGGATCGCCTTTCTGATTGATTTTATAGTGGCGGGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGc < 2:502932/285‑1 (MQ=25) aggaggTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCACTTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGAGAGGTGACGGGGGTTAAGCAGAATTGCTGCGCGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGCCAGATAGATAAAACCCCCAGTTAACATTCCGCGTCCGGCAAGACTCTTAACATTA‑ATCTAAGGCCATATCGATGCGAACCATAGAAATTACCCACTTCTGTGCTGAAAGCCAAg > 2:540326/1‑299 (MQ=255) gTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGaa > 1:87688/1‑299 (MQ=255) tCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACACTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAg < 1:531940/299‑1 (MQ=255) ctagctaTTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTCTGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGTTTAAGTAGAATTGCAGCGGGTCCTTGAGGCTATCTGTCTCGGGCATGCACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCACCAACACGCTTAACATTA‑AGCCAAGGCCATTTCTTATCGAAACATAGAGATTAACCTCTTAATTTCATACAGGCAAGGACAAGCAGGATATGTAGCCGCGAAAAGCGAt > 2:23116/1‑299 (MQ=25) ctagctaTTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGAt > 1:410057/1‑299 (MQ=255) gctaTTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGtt > 1:286844/1‑299 (MQ=255) cAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGCGGTGACGGGGTTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGTCAGCTAGAGAAAAGCCCCAGTTAACCTTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGTCCATACCTATGCGACACATAGAGATTAGCACCATATGTGCCGAAAGGCAAAGAAAACGAGGCCATGAATCAGAAAAAGGCGAGGTAAATAGCCCTCATCGTCAta > 2:124987/1‑298 (MQ=255) cAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGACCTGATCGTAATc > 1:586284/1‑299 (MQ=255) gTCTTGCTGTTTTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAAcc < 1:497583/299‑1 (MQ=255) gCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCAt > 1:341670/1‑299 (MQ=255) cTTTCTGTTTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAg < 1:273534/299‑1 (MQ=255) cTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGCTAAGTAGAATTGCTGCGGGAGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACACGTCCGGCAAGACGCTAAAAATTA‑CTCTTAGGCCATATCTATTCGACACATAGAGATTAGCATCTTATGTGCCGAAAGGCAAGGAAACGCAGGCTCTGATGCCACCAAAGGCGAAGTTCATCTCCCAGACGATCAACTGTATAACCGGAATTGTGACGCAACTGGCAACgcg > 2:70734/1‑297 (MQ=21) tgattgatTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAg > 1:175217/1‑299 (MQ=255) attgattTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGAc < 1:459173/299‑1 (MQ=255) ttATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCt < 1:567531/141‑1 (MQ=255) ttATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCt > 2:567531/1‑141 (MQ=255) gtggtGGGGAGGTGAGGGGTGTGAAGTATAATTGATAGGGGTGGTTGAGGCAAGCTGTCTAGGGCGTGAAAACAAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGTCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATATAGATTAGGCTCTTATGTGCCGAAAGGAAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAg < 2:555816/295‑1 (MQ=25) cGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAACAAAAGGGGATGTTAAACGACCGGATCGTCATCGGTTTAACCGTCATTGTCACGGCACTGGTACACAGGAAAGACCTCTGCGGGGTAcata > 2:592588/1‑296 (MQ=25) cGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAAcc > 1:336549/1‑299 (MQ=255) aGTAGAATTGCTGCGGGTGCTTGGGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACg < 1:255762/299‑1 (MQ=255) aGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACg < 1:386538/299‑1 (MQ=255) gcGGGTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAAACGGCCAGCCGGAGGGCGCTGTc > 2:355963/1‑299 (MQ=255) gggTGCTTGAGGCTATCTGTCTCGGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGATGTCtt > 1:413956/1‑299 (MQ=255) | GATGGTGACTGGTTGTTGTGTTCCATTTCTACAGAACAAAATCACAGAAACTATACCCAATAGTTGCATTGAATCACTGACGAGACATCCTCATATTTATCAGGACTGGTGTACGTCCAATACAGGAGGTTGTCGTGCTGGTTCTCAAATGTGCGCTAGCTATTGCGGCTGTAATGGCAATTTATTGTCTTGCTGTTGTTCTTATGGATCGCCTTTCTGATTGATTTTATATTGGCGAGGTGACGGGGGTTAAGTAGAATTGCTGCGGGTGCTTGAGGCTATCTGTCTCAGGCATGAACACCAAAAGGCAGATAGAGAAAAGCCCCAGTTAACATTACGCGTCCGGCAAGACGCTTAACATTA‑ATCTGAGGCCATATCTATGCGACACATAGAGATTAGCCTCTTATGTGCCGAAAGGCAAGGAGAAGCAGGCTATGAAGCAGCAAAAGGCGATGTTAATCGCCCTGATCGTCATCTGTTTAACCGTCATTGTGACGGCACTGGTAACGAGGAAAGACCTCTGCGAGGTACGAATCCGAACCGGCCAGACGGAGGTCGCTGTCTT > CP006584/1464532‑1465096 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |