Predicted mutation | ||||||
---|---|---|---|---|---|---|
evidence | seq id | position | mutation | annotation | gene | description |
RA | CP006584 | 2,483,647 | G→A | P236S (CCG→TCG) | LY180_11800 ← | NADH:ubiquinone oxidoreductase subunit M |
Read alignment evidence... | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | CP006584 | 2,483,647 | 0 | G | A | 96.5% | 182.5 / NA | 58 | P236S (CCG→TCG) | LY180_11800 | NADH:ubiquinone oxidoreductase subunit M |
Reads supporting (aligned to +/- strand): ref base G (0/2); new base A (27/29); total (27/31) | |||||||||||
Fisher's exact test for biased strand distribution p-value = 4.94e-01 | |||||||||||
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
GTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGGCATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAG > CP006584/2483360‑2483941 | gtAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTg < 1:614499/299‑1 (MQ=255) cGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGaagaag > 1:470461/1‑299 (MQ=255) cGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGaagaag < 1:454347/299‑1 (MQ=255) gAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGGCGGGGCCTGAGAGTGCCCCACCGGTAGCCAGCCATGCAGCGGAACCACCCACATTTTGACCGCGAAGGCGAAGAAGAAGc > 2:319668/1‑299 (MQ=255) ccATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGAAGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGAAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAAACGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCAAGCAAGGCAGCGGAACCCCCGACATTCTGACTGCGAAGGCGATGAAGAACCCCAGc > 2:285964/1‑299 (MQ=255) gtgGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTa < 1:319668/299‑1 (MQ=255) cGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTg > 1:377126/1‑299 (MQ=255) gTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGc < 1:167455/299‑1 (MQ=255) atatCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTAtt > 1:591296/1‑299 (MQ=255) tatCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGTCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTc < 1:641680/299‑1 (MQ=255) tatCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTc < 1:104941/299‑1 (MQ=255) tCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTcag < 1:47815/299‑1 (MQ=255) ggCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCtt > 1:648547/1‑299 (MQ=255) ggCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGACCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCtt < 1:76862/299‑1 (MQ=255) tgaaactcgcgcACGCAGCGGAGACGTCGCCGATAGCCCCCCGCCAGACGTGGAGTGGTGGAAACCGTGGCGGTGGGCTCGGGGAGAGCGGCAGGGAGGAACGGAGCAAAGCGTGAGCCGCAGGTTTCAGCAAGAGCGCCGCGAGGTCAACGGAAGCGGGGGTCGGGGCCTGAGAGTGCGCAGCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCGTTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCa < 2:13645/288‑1 (MQ=255) ccATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGCTTTCAGCAAGATCCCCGCCAGGTCAACGGAACCGGCGGTCGGAGCCGGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTCACTGCGAAGCGCATGAAGAAGCCCAGCATTAACAGGTATCCCACACCCCGGCACCTTGGCGTCTTCAGCAGCTCTTCagatctg > 2:508784/1‑293 (MQ=255) accgtgagaggcgCCGAGAACCCCCGGGCAGAGGGAGAGTGGGGCAAACTCGGCCGATGCGGTCGGGAACGGCGGAAGGGAGAAACGGAGCAAAGCGTAGGCGGCAGTTTGCAGCAAGAGCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGa < 2:559016/287‑1 (MQ=255) ccGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGAc < 1:371605/299‑1 (MQ=255) agaagaTGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCg < 1:508784/299‑1 (MQ=255) aTAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTa > 1:643466/1‑299 (MQ=255) caTAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATACCCGCGAGGTCAACGGAACCGGCGGTCCTAGCCGAAGAGTGCTCATCCGGTAGCCAGCCAGGCAGCGGAACCACCGACATCTTGACTGCGAAGGCGATGCAGAAGCCCAGCACTAAAAGACTTTACACACCACTGGAACCTGGTGTATTCACCAGC‑CCTGATACGTTAGAGGTCCACACGCCGGTCCCCTGGTAGTGCACAAAAAcaa > 2:634139/1‑297 (MQ=255) aTAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCAACGACATTTTGACTGCGAAGGCGATGAAGACGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATCAACCACCTCTTAATA‑GGTGAAGTTCCAGACGCCGGACGCGCTATAGGAAACAAAAACCac > 2:205907/1‑298 (MQ=255) aGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAgcg < 1:297104/299‑1 (MQ=255) gATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGCAGCCCAGCATTAACAGGTATTCCACACCACCGGACATTGGCGTAATCAGCAGCTCGTGATA‑GTCGAAGGTCCAGACGCCGGGCGCCTTGTAGAGGACAAAAAACAACGCCa > 2:464082/1‑299 (MQ=255) gATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCa > 1:380874/1‑299 (MQ=255) ggCGCAAACTCGGCCGAGGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGAt < 1:410466/299‑1 (MQ=255) ccGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATc < 1:447509/299‑1 (MQ=255) gATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCAc > 1:77416/1‑299 (MQ=255) aTGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCAAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCAcc > 2:347888/1‑299 (MQ=255) ttCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGcc < 1:330737/299‑1 (MQ=255) ggacaacgggaaGGGGGAAACCCAGCAAACCGTAGCGGGCAGCTTCCAGCAAGCACCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGGGAGTGGGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTc < 2:591296/288‑1 (MQ=255) aaaCGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATgaa > 1:60324/1‑299 (MQ=255) aaCGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATgaag > 1:105019/1‑299 (MQ=255) aCGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATgaaga > 1:501312/1‑299 (MQ=255) agagcaAACCGGAGGCGTCAGTTTTAAGAAAGAGCCCCGTGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCCTCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGGAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAAc < 2:591879/297‑1 (MQ=255) agcaAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACtt < 1:611731/299‑1 (MQ=255) cGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCAGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTg < 1:98716/299‑1 (MQ=255) aGTGTTCCGCAAGGTCGCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCGGAGAGTGGGCAGCCGGGAGCCAGCCAGGCAGCGGAACCACGGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATAc < 2:648547/299‑1 (MQ=255) tCAGCAAGATCCCCGCGGGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGtt < 1:614323/299‑1 (MQ=255) aGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCg > 1:522719/1‑299 (MQ=255) aGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCg > 1:332068/1‑299 (MQ=255) gATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGt > 1:317821/1‑299 (MQ=255) cgcgAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCAACCACACGGGGGTAAATGAAGAAATGGGTTGCCGCCGAGTAACGCGTGTTACCGTCATAgg > 2:339182/1‑299 (MQ=255) gAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAgg > 1:624714/1‑299 (MQ=255) tggcggTGCGCCACCGGTGGCGAGACATGCGGCGGAACCACCGGCATTTTGACTGCGAAGGCGATGAAGAAGCCCCGCATTAACAGGGATGCCACACCGCTGGACATTGGCGTATTCAGCAGCTCTACATA‑GTTGAAGGTCCAGACGCCGGTCGCAGTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTa < 2:105019/294‑1 (MQ=255) gagaGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTAc < 1:604172/299‑1 (MQ=255) gagTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAGGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATTGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACAt < 1:526328/299‑1 (MQ=255) ggcccATCCGGTGGCCAGCCATGCCGGGGAACCAGTGGCATGTTGCCGTGGCAGGCGATTAATAAGCCCCGCATTAACGGGTATTCCACACCACTGGACAGTGGCGTATTCAGCAGGTATTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAGCTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCgg < 2:377126/295‑1 (MQ=255) cgcATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAGGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCACATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATgaag < 2:224393/220‑1 (MQ=255) cgcATCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAGGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCACATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATgaag > 1:224393/1‑220 (MQ=255) aTCCGGTAGCCAGCCATGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCa > 1:57527/1‑299 (MQ=255) gagaccacccaTGCAGCGGAACCTCCGACAGTTTGACTGGGAAGGCGTTGAAGAAGCCCAGGATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGCCGCCGGTCGCATTGTAGTGACCAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGcatc < 2:643466/295‑1 (MQ=255) gccagccaTGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCAtt < 1:339182/299‑1 (MQ=255) gccagccaTGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCAtt > 1:124243/1‑299 (MQ=255) ccagccaTGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTTAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCAttt < 1:464082/299‑1 (MQ=255) ccaTGCAGCGGAACCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCa > 1:193129/1‑299 (MQ=255) aaCCACCGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCagaagaagaaga > 1:15647/1‑299 (MQ=255) accGACATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAg < 1:285964/299‑1 (MQ=255) | GTAGATAGCAATCAGCACGAAGCCCATGTGGGAAACCGAGGTGTAGGCGATCAGACGTTTGATATCGGTCTGGGCGAAAGCCATCCACGCACCGTAGAAGATGCCGATAACCCCCAGCCACATAGCGATTGGCGCAAACTCTGCCGATGCGTTCGGGAACAGCGGCAGGGAGAAACGCAGCAAACCGTAAGCGGCAGTTTTCAGCAAGATCCCCGCGAGGTCAACGGAACCGGCGGTCGGAGCCTGAGAGTGCGCATCCGGTAGCCAGCCATGCAGCGGAACCACCGGCATTTTGACTGCGAAGGCGATGAAGAAGCCCAGCATTAACAGGTATTCCACACCACTGGACATTGGCGTATTCAGCAGCTCTTCATA‑GTTGAAGGTCCAGACGCCGGTCGCATTGTAGTGAACAAAAACCAGCGCCAGGATGGCAATCAACATCACCAGGCCACTCGCCTGGGTGTAAATGAAGAACTTGGTTGCCGCCGTGATACGCGTTTTACCGTCAGAGGCTTTATGCCCCCACAGTGCGATCAGGAAGTACATCGGCACCAGCATCATTTCCCAGAAGAAGAAGAACAG > CP006584/2483360‑2483941 |
Alignment Legend |
---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |