Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006584	3,545,689	T→C	noncoding (2811/2931 nt)	LY180_16870 ←	23S ribosomal RNA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006584	3,545,689	0	T	C	94.6%	55.8 / NA	37	noncoding (2811/2931 nt)	LY180_16870	23S ribosomal RNA
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base C (18/17);  total (19/18)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

CGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CTC‑TCAAGGAGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCA  >  CP006584/3545397‑3545778                                                                                                                                                                                                                                                                                                      |                                                                                            cGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTaa                                                                                       >  1:637132/1‑298 (MQ=14)   cATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTaaag                                                                                     <  1:614263/298‑3 (MQ=14)                 acacTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACt                                                                      >  1:742140/1‑298 (MQ=14)                 acacTACCATCGGCGCTACGGCGTTTCACTGCTGAGTTCGGCATGGGGTCAGGCGGGACCACCGCGCTAAGGCCGCCAGGCCAATTCTGTTTTATCAGACCGCCTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTCCTCTCATCCGCCCAAACACCTTCGGCGTTGTCAGGTTAAGCCTCACGGTCCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACCACCCCGGCCTCCCAACCTCTTCCTACTCCACGTTCCTTCACGACCCC‑TCAAGG‑GTCA‑CGGAGAAcg                                                                      >  2:130502/1‑297 (MQ=11)                       cattgggggcTCCGCCGTTTGACTTCTGGGTTTGGAATGGGGTCTGTGGTGACCACCGCGCTAAGCCGGCCAGGCAAATTCTGTGTTATCAGACCGCTTCGCCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTATCATCAGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCAtctc                                                                <  2:405609/290‑1 (MQ=11)                         aTCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTGCTCTCATCCGCCAAAACAACTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACAACCTGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCAtctccg                                                              >  1:614328/1‑296 (MQ=9)                                 tACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGtt                                                      >  1:25476/1‑298 (MQ=14)                                 gaCGGCGTTCCCCTGCTGAGTTCGGCATGGGGGCAAGGGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTGTATGCGACCGCTTTTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCCCGCCTCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGtt                                                      <  2:311633/297‑1 (MQ=11)                                  aCGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TCAACGGCTCA‑GGGAGAACTCATCCACGGCCAAGttt                                                     >  2:1000851/1‑298 (MQ=9)                                    ggCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCg                                                   <  1:918694/298‑1 (MQ=14)                                     tgttttCACTTCTGGGTTGGGCAGGGGGTCCGGTGGGACCAACGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCGGATTTAATCTGTATCAGGCTGAAAAGCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGt                                                  <  2:681468/295‑1 (MQ=11)                                     gCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGt                                                  <  1:520185/298‑1 (MQ=14)                                        tttCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTggt                                               >  1:521226/1‑296 (MQ=14)                                          tCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCCGGACCTG‑TAAAGG‑CTTA‑GGGATAAACCCTTCCGGGGCAGGTTTCGTCCTTa                                             >  2:944196/1‑298 (MQ=11)                                          ggccttgtggatttggCATGGGGTCAGGTGGGCCCACCGCGCTAAGGCCGCAAGGCAAATTCTGTTTTATCAGACCGCTGCTGCGTTCTGATTTAATCTGTATCATGCTGAAAATCTTCTCTCCTCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTa                                             <  2:902104/284‑1 (MQ=11)                                             cTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGCCCTATCAACGCCCTCGTCTTCACCGTTCCTTCAGGC‑CCC‑TTAACGGGCCC‑GGCAGCCCCCACACCGGGACACGTTTCGTGCTTAGAt                                          >  2:118763/1‑298 (MQ=11)                                               tgtgtggtgggCGTGGGGTCTGGGGGGACCCACGGGTTAAGGCCGCCAGGCAAATTCTGTTGTATCAGACCGCTTCTGCGTTCTGCTTTAATCTGGTTCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGc                                        <  2:977286/289‑1 (MQ=11)                                               tCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGc                                        >  1:1444/1‑298 (MQ=14)                                                  gAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCttt                                     >  1:659915/1‑298 (MQ=14)                                                   aGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTc                                    <  1:609758/298‑1 (MQ=14)                                                           aTGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCGCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTa                            >  1:993909/1‑298 (MQ=9)                                                            tGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTCTCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTCCCGGTTAGCCCCACGCATCGCTGCGCTTACACACCCGGCCTACCAACGTCGTCGTCTTCCACGTTCCTTACGGA‑CCC‑TTACAGGGCTA‑GGGAGAACTCAACCCGGGGCAAGGTTCCTGCCTAAATGCCTTCACCACttca                           >  2:17807/1‑296 (MQ=11)                                                            tGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTAt                           >  1:676720/1‑298 (MQ=14)                                                              gggtagcgTGGGACCACCGGGCTGAGGCCGCCAGGCAAATTCTGTTTTTTCAGACCGCTTCGGCGTTCGGATTTAATTTGTATCAGGCTGAAGATCTTCTCTCATCCGCCAAAACACCGGCGGCGTTGTAATGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCGCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGGCGTCGTCTTCAACGTTGCTTCAGGA‑CTC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTAtct                         <  2:183754/291‑1 (MQ=11)                                                                gTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATctct                       >  1:374075/1‑298 (MQ=14)                                                                gTCAGGGGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATctct                       <  1:264386/298‑1 (MQ=9)                                                                   aGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCCCTTACACACCCGGCCGATCCACGTCGTCGTCTTCAACGTTCCTTCCGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCCTGCCTAAATGCTTTCACCACTTAGATCTTcc                    >  2:906559/1‑298 (MQ=11)                                                                    ggTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTc                                                    <  1:224580/265‑1 (MQ=14)                                                                    ggTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCCCGGGGCAAGTTTc                                                    >  2:224580/1‑265 (MQ=9)                                                                     gTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATAGACTCGCTTACACACCAGGCCTCTCACCGGCTTAGTCTTCACAGTTCCTTCCGGA‑CCC‑TTAAAG‑GACACGGGAGACCCCATCTCGGGTCCAGTTACGGGCCTTAAGTCTTTCAGCGTTTATATCTCCCGc                  >  2:1014295/1‑298 (MQ=11)                                                                       gggACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCAt                <  1:626756/298‑1 (MQ=14)                                                                          accaccGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTa             <  2:116526/298‑1 (MQ=14)                                                                           ccaccGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAg            <  1:128254/298‑1 (MQ=14)                                                                            caccGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGc           <  1:286816/298‑1 (MQ=14)                                                                              ccGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTa         <  1:282244/298‑1 (MQ=14)                                                                                     aaGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCCTTCAAGG‑GTCA‑GGGAGAACTCATCCCGGGGCAAGTTTCGCGCTTAGATGCTTTCAGCACTTATCACTTCCGCATTGAGCTACCgcgac  >  2:365374/1‑294 (MQ=11)                                                                                     aaGGCCCCCAGGCAAATTCTGTTTTATCAGGCCCCTTTTGCGTTCTGATTTAATCTGTATCAGGCTGAAAACCTTCTCTCAGCCGCTAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CCC‑TTAAAGGGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCa  <  2:452168/298‑1 (MQ=11)                                                                                                                                                                                                                                                                                                      |                                                                                            CGCATGGGGAGACCCCACACTACCATCGGCGCTACGGCGTTTCACTTCTGAGTTCGGCATGGGGTCAGGTGGGACCACCGCGCTAAGGCCGCCAGGCAAATTCTGTTTTATCAGACCGCTTCTGCGTTCTGATTTAATCTGTATCAGGCTGAAAATCTTCTCTCATCCGCCAAAACACCTTCGGCGTTGTAAGGTTAAGCCTCACGGTTCATTAGTACCGGTTAGCTCAACGCATCGCTGCGCTTACACACCCGGCCTATCAACGTCGTCGTCTTCAACGTTCCTTCAGGA‑CTC‑TCAAGGAGTCA‑GGGAGAACTCATCTCGGGGCAAGTTTCGTGCTTAGATGCTTTCAGCACTTATCTCTTCCGCATTTAGCTACCGGGCA  >  CP006584/3545397‑3545778

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑