| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | CP006584 | 459,705 | Δ1 bp | coding (137/276 nt) | LY180_02175 ← | transcriptional regulator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | CP006584 | 459,702 | 0 | C | . | 96.2% | 219.3 / 0.9 | 53 | coding (140/276 nt) | LY180_02175 | transcriptional regulator |
| Reads supporting (aligned to +/- strand): ref base C (2/0); new base . (31/19); total (33/20) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 5.27e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAGGGA > CP006584/459410‑459993 | tGGAAAACGGCGGTAGGGGTGACTTTAATCACCACTTTACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGcccgaa < 2:370321/298‑4 (MQ=255) aaaCGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGc < 1:283343/298‑1 (MQ=255) aTGGGTGACTTTAAACAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGt > 1:6470/1‑298 (MQ=255) aCTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTa < 1:220469/298‑1 (MQ=255) aCTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTa > 1:228629/1‑298 (MQ=255) tttAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATg < 1:121203/298‑1 (MQ=255) tttAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATg < 2:228629/298‑1 (MQ=255) gCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCa > 1:401091/1‑298 (MQ=255) aCTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTTATTTCATCTCTCGCTCTTCCGCAATATGGTAATCGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCAtt < 2:381912/298‑1 (MQ=255) aCCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTCGACGCG‑CCCGAACCGCAGCGCTCTGTTGGAGTATGGTATGGCATTCGGCa > 2:462838/1‑298 (MQ=255) caaaCGCCAATTACAACGATTTCCAGCGTTTTACCGGGAGCAAATGCAACGGCAGCACTTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGAcc < 2:401091/296‑1 (MQ=255) aCGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGCTTCAGCTATTTAAGATAGGCTCGCACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTGGGTCACACGTTTCCCGGATATGGATTTCAAGCACTACTCCCATCAGCCCGTTACCCGCG‑CCCGACCGGCCGCCAGCTGTTGGTGTTGTGCCCGGCGTTCGGAAGCACCCTCCCGCGACCGGTCCagacctacaa > 2:323587/1‑291 (MQ=255) aCGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCaa > 1:128314/1‑298 (MQ=255) aGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGACTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCCTTCGGCATCACCCTCCAGCGACCGTTCCAAAGCATccaaccgcctcc > 2:509844/1‑287 (MQ=255) aCCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGC‑CCCCCAACGGCAGCGATCTGTTGGAGTATGGCCCGGCATTCGGCCTCACCCCCCAGCGACCGTTCCCACGCCCCAACCTGCCCTccgctacac > 2:179909/1‑290 (MQ=255) aaaTGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGa < 1:462838/298‑1 (MQ=255) aaCGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCAGTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAgg < 2:371900/298‑1 (MQ=255) aCGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCC‑ACCGGCCGCGCTCTGTTGGAGTATGGCCCGGCCTTCGGCACCACCCCCCACCCACCGTTCCAGCGCACCCACCTGCCATCGAATACACCGACCCCGGGTCAGGa > 2:301724/1‑298 (MQ=255) aCGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGATTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCATCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTttc > 1:167182/1‑298 (MQ=255) cATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTcttcccttcc > 1:332770/1‑298 (MQ=255) cATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGACTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTcc < 1:509844/298‑1 (MQ=255) ctctTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGTAGTACtt > 1:246346/1‑297 (MQ=255) tcctaaaatttgTAAAAGATTCATGTTATTAAAATAGGCTCGAACCGGTTCAATGTGGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCa < 2:6470/287‑1 (MQ=255) tcaaattGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCTGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCAttt < 1:373304/292‑1 (MQ=255) aTAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCtcatc > 1:288890/1‑298 (MQ=255) agccttttAAGATAGGTCCGAACCAGTTCAATAGTGTCGTTAACGGATTGGCTTACGGCGCGGCTGTAGCACTCATTTCGGTCAAACCTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGC‑TCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGACATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCAc < 2:87775/293‑1 (MQ=255) cgaTTTAAGATGGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGGCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGc < 2:474171/296‑1 (MQ=255) tATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCAtt > 1:15561/1‑174 (MQ=255) tATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCAtt < 2:15561/174‑1 (MQ=255) aTTTAAGATAGGCTCGAACTAGTTCAATAGTGTCGTCAACGGATTGGCTGCTTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCaa < 1:323587/298‑1 (MQ=255) cTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAggg > 1:254343/1‑298 (MQ=255) tCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCCCCCCACCCTCTGCCCCCAATAACCTAAAgggg > 2:169934/1‑298 (MQ=255) aaCCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCCGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCCATCTGCCCTCGAATACGACGCACTCGAGTAAGGACCTTTTTTTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCCTCACCTGCCCGCAATATCCTATAGGGGGGt > 2:450912/1‑298 (MQ=255) cAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCtata < 1:219864/298‑1 (MQ=255) aaTAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCCCCCTCCAGCGACCGGTCCAGAGCATCAATCTGCCCTCGAATCCGACCAACTCGAGGAAGGACCTTTTTCTTCTCTTCCGGCGTCCTGGGCCTTTCGCACCTCATCTACTGCCCGACATTAACTAAAgggggggtggcgtgac > 2:35097/1‑288 (MQ=255) tgtCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCaa > 1:561504/1‑298 (MQ=255) aaCGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATAc > 1:564314/1‑298 (MQ=255) aCTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGtat < 1:96550/298‑1 (MQ=255) ggCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAacac > 1:397684/1‑298 (MQ=255) tGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCCTCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATAACCCCCTATCGTATATAAAACTgg > 2:154504/1‑298 (MQ=255) tCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGCGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCCTCTGCACGCACTATACTATAGGGGGGTATGCCATATGTCCATGCATTCCCCCCCATTGTATATAACACTGGAGCAGAAAAATTa > 2:249196/1‑298 (MQ=255) gTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATcc < 1:290525/298‑1 (MQ=255) tCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTGGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCg < 2:102766/298‑1 (MQ=255) tCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGACATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCATCTCTTCCGGAGTACTGTGCATTTCGCCCCTCCTCATCTGCACGCAATAACCTTTAGGGGGGTATGCTCTTAGTGCATGCATCACCACCTATTGTATCTAACACTCGGGAATAAAATTTATcac > 2:408611/1‑296 (MQ=255) ggATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCCCCTCATCATCTTCCCGCCATATACTATAGGGGGGTATGCTATTGGTCAAGGCATACCCCCCCATAGTATACAACACTGGAGAAAAAAATTTATCCGGTGatgtgtggcg > 2:19023/1‑289 (MQ=255) tttCAAGCACTTCTGCCATCAGCCCGTTAACCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACTGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACaaa > 2:154716/1‑298 (MQ=255) aaGCACTTCTGCCATCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAgg > 1:253507/1‑298 (MQ=255) aTCAGCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTa > 1:167440/1‑298 (MQ=255) gCCCGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCCTACCCCCCTATAGTATATAACACTGGAGAATAAAATTTAACCGGTGAATGTGGTCGGAAAACAAAGAGGAACGGGGGGGCAAAtgg > 2:229285/1‑296 (MQ=255) ccGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTCAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCCCGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATCTAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGTAAAAAAAGAGGAAAGGGGGGGATAAtgcgc > 2:156317/1‑294 (MQ=255) cGTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCCATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATATGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATCCCCCCCTATAGTATATAACACTTGAGAATAAAATTTATCCTGTGAATGTGGTCGGCAAACAAAGAGGAAAGGGGGGGTCAATAGGCa > 2:327752/1‑298 (MQ=255) gTTAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAg > 1:413360/1‑298 (MQ=255) ttAGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAgg < 1:154504/298‑1 (MQ=255) aGCCGCG‑CCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCATATAGTATATAACACTGGAGAATAAAATTTATACGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAGGGa > 1:415243/1‑298 (MQ=255) | TGGCAAACGCCGGTATGGGTGACTTTAATCAGCACTTCACCTTTTTTCGGTGGTGCAACGTCAATTTCAACGATTTCCAGCGGTTTACCGGGAGCAAATGCAACGGCAGCACGTGATTTCATCTCTCGCTCTTCCTCAATATGGTAATAGATTCAGCTATTTAAGATAGGCTCGAACCAGTTCAATAGTGTCGTCAACGGATTGGCTGACTTCGCGGCTGTAGCAGTCATTTCGGTCAAACGTTTCCCGGATATGGCTTTCAAGCACTTCTGCCATCAGCCCGTTAGCCGCGCCCCGAACGGCAGCGATCTGTTGGAGTATGGCACGGCATTCGGCATCACCCTCCAGCGACCGTTCCAGAGCATCAATCTGCCCTCGAATACGACGAACTCGAGTAAGGACCTTTTTCTTCTCTTCCGGAGTACTGGGCATTTCGCACCTCATCATCTGCACGCAATATACTATAGGGGGGTATGCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGAGGAAAGGGGGGGCTAATCGGCAGGGA > CP006584/459410‑459993 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 9 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |