New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	3497094 =	29 (1.110)	3 (0.120)	3/274	2.8	9.7%	coding (92/807 nt)	nirC	nitrite transporter
	?	NC_000913	3497106 =	29 (1.200)					coding (104/807 nt)	nirC	nitrite transporter
Rejected: Frequency below cutoff threshold.

ATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGTTCTGAACTGTTCACCGGAC  >  NC_000913/3496970‑3497249                                                                                                                                         |                                                                                                                                                ccggcgataatccccagcgttaaggcgataccaaaggtcgcgcccatcaccaaagggcgtacggatggatcgagcaaattaccgagcgtgaaaatcaggatgatcccaagacccacatacgcgcccgccatggcggGCGCGTATGTGGGTc                                                                                                                                   <  1:200621‑M2/15‑1 (MQ=255)      ttGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTggg                                                                                                                              <  1:349546/151‑1 (MQ=255)       tGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGa                                                                                                                             <  1:129058/151‑1 (MQ=255)         tttttATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGat                                                                                                                            <  2:15276/150‑1 (MQ=255)             tATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATcc                                                                                                                       <  1:397500/151‑1 (MQ=255)             tATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATcc                                                                                                                       <  1:255755/151‑1 (MQ=255)                   gttaaggcgataccaaaggccgcgcccatcaccaaagggcgtacggatggatcgagcaaattaccgagcgtgaaaatcaggatgatcccaagacccacatactcgcCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGCttt                                                                                                                 <  1:378014‑M1/45‑1 (MQ=255)                          aTAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGc                                                                                                           >  1:83987/1‑150 (MQ=255)                          aTAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCt                                                                                                          <  2:76268/151‑1 (MQ=255)                                   tGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAAttt                                                                                                 <  2:357104/151‑1 (MQ=255)                                    gTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGCGGGTCTTGGGATCATCCCGATTTTCACGCCCGGGAATTTg                                                                                                >  1:160964/1‑151 (MQ=255)                                               cTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCCTCCTGCTTTTCACGCTCGGTAATTTGCTCGatccat                                                                                      >  2:10030/1‑150 (MQ=255)                                                 accaaagggcgtacggatggatcgagcaaattcccgagcgtgaaaatcaggatgatcccaagacccacatacgcgcCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                                                                   >  1:335154‑M1/77‑151 (MQ=255)                                                 aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                                                                   >  2:73897/1‑151 (MQ=255)                                                 aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                                                                   >  1:190584/1‑151 (MQ=255)                                                 aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGGAATTTGCTCGATCCATCCg                                                                                   >  1:335888/1‑151 (MQ=255)                                                 aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCCCCGCCATGGCGGGCGCGGATGTGGGTCTTGGGATCATCCTGATTTTCCCGCTCGGTAATTTGCTCGATCCATCCg                                                                                   >  2:374114/1‑151 (MQ=255)                                                 aTTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGGCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                                                                   <  2:69952/151‑1 (MQ=255)                                                 aTTAATAAGGGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGGCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCg                                                                                   >  2:254443/1‑151 (MQ=255)                                                       aaGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGcc                                                                             <  2:312926/151‑1 (MQ=255)                                                              cggatggatcgagcaaattaccgagcgtgaaaatcaggatgatcccaagacccacatacgcgcccgccatggcggGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGGAATTTGCTCGATCCATCCGTACGCCCTTTGGt                                                                      >  1:335154‑M2/76‑151 (MQ=255)                                                              cGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGt                                                                      <  1:62730/151‑1 (MQ=255)                                                                                ttGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGGAATTTGCTCGATCCCTCCGTACGCCCTTTGGGGATGGGCGCGACCTTTgg                                                    >  1:398256/1‑151 (MQ=255)                                                                                ttGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGGCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTgg                                                    >  1:233639/1‑151 (MQ=255)                                                                                       ccTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGGATGGGGGTCTTGGGATCATCCTGATTTTCACGCCCGGTAATTTGCTCGATCCATCCGTACGCCCTTTTGTGATGGGCGCGGCCTTTGGTATCGc                                              >  2:13332/1‑150 (MQ=255)                                                                                            aaagcaggatgatcccaagacccacatacgcgcccgccatggcggGCGAGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGGCCTTTGGTATCGCCTTAAc                                        <  1:378014‑M2/106‑1 (MQ=255)                                                                                               cAAATAACCCGATCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATTGGCGCGACCTTTGGTATCGCCTTAACGc                                      <  2:142064/150‑1 (MQ=255)                                                                                                    aaCCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGa                                <  1:197853/151‑1 (MQ=255)                                                                                                           tCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGc                         <  1:242970/151‑1 (MQ=255)                                                                                                              gacccacatacgcgcCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGGGATTATCGCCgg                      <  1:200621‑M1/136‑1 (MQ=255)                                                                                                              gCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGCTTTTCACGCTCGGTAATTTGCTCGATCCCTCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGGGATTATCGCCgg                      >  2:51054/1‑151 (MQ=255)                                                                                                              gCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCgg                      >  1:63051/1‑151 (MQ=255)                                                                                                                       tCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGTTCTGAAc              <  1:191226/150‑1 (MQ=255)                                                                                                                           cTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGTTCTGAACTGt           <  2:124711/149‑1 (MQ=255)                                                                                                                           cTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGTTCTGAACTGTTc         <  2:334808/151‑1 (MQ=255)                                                                                                                               gccatggcggGCGCGTATGTGGGGCTTGGGATCATCCTGATTTTCACGCCCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGGTCTGAACTGTTCACCg     >  1:169328‑M2/11‑151 (MQ=255)                                                                                                                                  ATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGTTCTGAACTGTTCACCGGac  >  1:257945‑M1/1‑151 (MQ=255)                                                                                                                                         |                                                                                                                                                ATTTTTTGTTTTTATTTTTTAAAGGATAATCAAATGTTTACAGACACTATTAATAAGTGTGCGGCTAACGCTGCGCGCATTGCACGCCTGTCGGCAAATAACCCGCTCGGCTTTTGGGTCAGCTCCGCCATGGCGGGCGCGTATGTGGGTCTTGGGATCATCCTGATTTTCACGCTCGGTAATTTGCTCGATCCATCCGTACGCCCTTTGGTGATGGGCGCGACCTTTGGTATCGCCTTAACGCTGGTGATTATCGCCGGTTCTGAACTGTTCACCGGAC  >  NC_000913/3496970‑3497249

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.