| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 1616905 | 54 (0.810) | 7 (0.110) | 6/278 | 5.9 | 12.3% | intergenic (+27/‑123) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible |
| ? | NC_000913 | = 1616917 | 49 (0.790) | intergenic (+39/‑111) | yneK/ydeA | uncharacterized protein/arabinose efflux transporter, arabinose‑inducible | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below cutoff threshold. | |||||||||||
TGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACAACAAACACTGTTTCCCGCAAA > NC_000913/1616755‑1617054 | tgaaaaaaaTGAACCCCCGCCAAAAGTTCCTCCCGAAGCCCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCCCCTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTAAcgc < 2:542883/148‑1 (MQ=255) aaaTGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTCCCGACTCCCTGACGCGTGaaa > 2:841282/1‑151 (MQ=255) aaaTGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGaaa > 2:564700/1‑151 (MQ=255) aaaTGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGaaa > 1:78813/1‑151 (MQ=255) aaaCACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCCCCTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATc < 1:52389/151‑1 (MQ=255) aaaCACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAAt > 1:506799/1‑150 (MQ=255) aaaaGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCCCCTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCagag < 1:23223/151‑1 (MQ=255) aaGTTACTCACGAAGACCTGGGGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGaa > 2:485224/1‑151 (MQ=255) gTTAATAACGAAGACCTGGAGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGCCCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGAGAAAGAATCAGCGTCAGAGaaa > 1:561/1‑150 (MQ=255) ttcggcgcGAAGACCGGATGAAAAACGGGCCTCGCCCCCCGTTCAGACCCCATAAGCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGGCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAgagagg < 1:421636/142‑3 (MQ=255) ttACTCACGAAGACCGGGGGAAAAACAGGCCTCCCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAgagagt < 1:445813/149‑3 (MQ=255) cTCACGAAGCCCGGGTGAAAAACAGGCCCCCCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAgagagtcggta < 2:489215/151‑8 (MQ=255) cACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGCAAGAATCAGCGTCAGAGAAACGGaaaa > 1:38494/1‑151 (MQ=255) gACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGAt > 1:596943/1‑151 (MQ=255) ggTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGa > 2:266086/1‑151 (MQ=255) cccTCGCTCCCCGGTCAGACCCCCTATACCCGAAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAAGCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATg < 1:140532/147‑1 (MQ=255) ccTCGCCCCCCTGTCAGACCACCTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCAt < 2:45250/150‑1 (MQ=255) ccccTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTca > 2:732232/1‑151 (MQ=255) ccTGTCAGCCCACCTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcaca < 2:507019/151‑1 (MQ=255) ccTGTCAGACCCCCTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcaca < 2:811920/151‑1 (MQ=255) ccTGTCAGACCCCCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcaca < 1:766612/151‑1 (MQ=255) ccTGTCAGACCCCATATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcaca < 1:206866/151‑1 (MQ=255) ccTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcaca < 1:420539/151‑1 (MQ=255) ccTGTCAGACCACCTATACCCGAAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTcaca < 2:606918/151‑1 (MQ=255) cTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCAcat > 1:620575/1‑151 (MQ=255) acccccTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAAc < 2:60887/151‑1 (MQ=255) acccccTACACCCGAAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAAc < 2:61009/151‑1 (MQ=255) ccaccTATCCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAAcc < 2:211506/151‑1 (MQ=255) ccaccTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAAcc < 2:904724/151‑1 (MQ=255) caccTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCg < 1:483877/151‑1 (MQ=255) ccTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGtt > 1:179076/1‑151 (MQ=255) ccTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGtt > 1:1052764/1‑151 (MQ=255) ataCCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTa > 1:40375/1‑151 (MQ=255) ccAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTtcatc < 2:460618/151‑1 (MQ=255) cGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACtttt > 2:705839/1‑151 (MQ=255) cGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACtttt > 1:1000299/1‑151 (MQ=255) cTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCAcc < 2:424657/151‑1 (MQ=255) gAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGGCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCg > 2:769320/1‑151 (MQ=255) aaCGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCg < 1:365000/150‑1 (MQ=255) cGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATa > 1:224860/1‑151 (MQ=255) tCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAAt > 1:574504/1‑151 (MQ=255) tCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAAt > 1:674720/1‑151 (MQ=255) tCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAAt < 1:849255/151‑1 (MQ=255) tCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAAt > 2:431578/1‑151 (MQ=255) aTTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAAt > 1:992991/1‑149 (MQ=255) aTTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAAt > 2:276106/1‑149 (MQ=255) tAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGt < 2:468041/151‑1 (MQ=255) tAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCCATCCAGATCACAAATGCATTGTATTCCCATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCGCCCGATAATCTGt < 2:168896/151‑1 (MQ=255) aCCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTAt > 1:119882/1‑151 (MQ=255) aCCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTAATCACTTTTTCGCAACTCACCCGATAATCTGTTAt > 2:107200/1‑151 (MQ=255) cGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGa < 1:493874/151‑1 (MQ=255) gTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGAcaacaa > 2:433743/1‑151 (MQ=255) tACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACaacaaa > 1:1056888/1‑150 (MQ=255) aCTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACaacaaaca > 1:621219/1‑147 (MQ=255) tctGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACAACAAACACTGTTTcc < 2:719898/151‑1 (MQ=255) tctGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACAACAAACACTGTTTc > 2:535322/1‑150 (MQ=255) cgcgTGAAACAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGAACATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACAACACACACTGTTTCCCGCaa > 1:789671/1‑151 (MQ=255) gcgTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACAACAAACACTGTTTCCCGCaaa > 2:856140/1‑151 (MQ=255) | TGTAAAAAATGAAACACCGCCAAAAGTTACTCACGAAGACCTGGTGAAAAACAGGCCTCGCTCCCCTGTCAGACCACCTATACCCGCAACCGCCAAAACGCCAGACCTCCCTGAACGTCATTAAACCGTGATGTTACCGACTCTCTGACGCGTGAAAGAATCAGCGTCAGAGAAACGGAAAACGCGATCCAGATCACAAATGCATTGTATTCACATCATTAACCGTTTTAAGATCATTTCATCACTTTTTCGCAACTCACCCGATAATCTGTTATGACAACAAACACTGTTTCCCGCAAA > NC_000913/1616755‑1617054 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |