New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1136017 =	37 (0.900)	4 (0.100)	4/280	4.1	10.4%	coding (454/699 nt)	flgH	flagellar protein of basal‑body outer‑membrane L ring
	?	NC_000913	1136038 =	34 (0.880)					coding (475/699 nt)	flgH	flagellar protein of basal‑body outer‑membrane L ring
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

CGCGCATCCGCCACCTGAGTAGACGGTACGGTATTGCTGCCGCTGATAGTGCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1136174‑1136017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtcaacGGCAACCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAATTTATTCGCTTCTCTGGCGTGGTTAATCCACGCACTATCAGCGGCAGCAATACCGTACCGTCTACTCAGGTGGCGGATGCGCGCATTGAATACGTA  >  NC_000913/1136038‑1136187                                                                                                                                                                                                                                                                                                                      CGCGCATCCGCCACCTGAGTAGACGGTACGGTATTGCTGCCGCTGATAGTGCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCT                                                                                                                                                               <  2:26882/151‑1     CATCCGCCACCTGAGTAGACGGTACGGTATTGCTGCCGCTGATAGTGCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGGT                                                                                                                                                            <  1:459740/150‑1       TCCGCCACCTGAGTAGACGGTACGGTATTGCTGCCGCTGATAGTGCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGGTCAA                                                                                                                                                         >  2:84583/1‑151               CTGAGTAGACGGTACGGTATTGCTGCCGCTGATAGTGCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCCCCACATGCAGGTTGCCGTTGACCAGTACCTGGTCAACGGCAGCC                                                                                                                                                 <  1:46900/151‑1                                     CTGCCGCTGATAGTTCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGGTCAACGGCAACCTGCATGTGGTGGGTGAAAAAC                                                                                                                            <  1:558215/150‑1                                                              CCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGGTCAACGGCAACCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAA                                                                                                  <  1:112501/151‑1                                                                                                           TCTGTTTATCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGTTAAACGGCAGCCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAATTTATTCGCTTCTCTGGCGTGGTTAATCCACGCACTATCAGCGGC                                                     <  1:52095/151‑1                                                                                                                                                             ACGGCAACCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAATTTATTCGCTTCTCTGGCGTGGTTAATCCACGCACTATCAGCGGCAGCAATACCGTACCGTCTACTCAGGTGGCGGATGCGCGCATTGAATACGT   >  2:470458/1‑151                                                                                                                                                             ACGGCAACCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAATTTATTCGCTTCTCTGGCGTGGTTAATCCACGCACTATCAGCGGCAGCAATACCGTACCGTCTACTCAGGTGGCGGATGCGCGCATTGAATACGT   >  2:77123/1‑151                                                                                                                                                              CGGCAACCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAATTTATTCGCTTCTCTGGCGTGGTTAATCCACGCACTATCAGCGGCAGCAATACCGTACCGTCTACTCAGGTGGCGGATGCGCGCATTGAATACGTA  <  2:440027/151‑1                                                                                                                                                                                                                                                                                                                      CGCGCATCCGCCACCTGAGTAGACGGTACGGTATTGCTGCCGCTGATAGTGCGTGGATTAACCACGCCAGAGAAGCGAATAAATTCGGTACCCTGATTAATGGCAATCTGTTTTTCACCCACCACATGCAGGTTGCCGTTGACCAGTACCTGGTCAAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  NC_000913/1136174‑1136017 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ctggtcaacGGCAACCTGCATGTGGTGGGTGAAAAACAGATTGCCATTAATCAGGGTACCGAATTTATTCGCTTCTCTGGCGTGGTTAATCCACGCACTATCAGCGGCAGCAATACCGTACCGTCTACTCAGGTGGCGGATGCGCGCATTGAATACGTA  >  NC_000913/1136038‑1136187

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.