New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	= 3592583	31 (0.840)	5 (0.130)	5/270	3.5	13.9%	noncoding (20/99 nt)	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
	?	NC_000913	= 3592647	NA (NA)					noncoding (84/99 nt)	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site	RIP258 (repetitive extragenic palindromic) element; contains 2 REP sequences and 1 IHF site
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below cutoff threshold.

ATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCG  >  NC_000913/3592436‑3592730                                                                                                                                                    |                                                                                                                                                    aTAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCtt                                                                                                                                                  >  2:223197/1‑151 (MQ=255)     tAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATc                                                                                                                                               <  1:199458/150‑1 (MQ=255)     tAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATc                                                                                                                                               <  1:442377/150‑1 (MQ=255)                 aaGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGAt                                                                                                                                  <  2:487857/151‑1 (MQ=255)                 aaGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGAt                                                                                                                                  <  1:624324/151‑1 (MQ=255)                 aaGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGAt                                                                                                                                  <  1:269025/151‑1 (MQ=255)                    aTGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCg                                                                                                                                <  1:608752/150‑1 (MQ=255)                           ggCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAAtt                                                                                                                        >  1:467025/1‑151 (MQ=255)                               gTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCaa                                                                                                                     >  1:619698/1‑150 (MQ=255)                                              aGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTctc                                                                                                      <  2:225730/150‑3 (MQ=255)                                                     aagggAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGGGCAAATTCAACATATTGCCACTCACCCAGTAgg                                                                                              >  2:634970/3‑151 (MQ=255)                                                        ggAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGcc                                                                                            <  1:648696/150‑1 (MQ=255)                                                        ggAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGcc                                                                                            <  1:238998/150‑1 (MQ=255)                                                        ggAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGcc                                                                                            <  1:527286/150‑1 (MQ=255)                                                            aTGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATa                                                                                       <  1:317662/151‑1 (MQ=255)                                                                ggCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagc                                                                                    <  1:528046/150‑1 (MQ=255)                                                                  cACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagcgc                                                                                  <  2:499074/150‑1 (MQ=255)                                                                    cGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagcgcag                                                                                >  1:425592/1‑150 (MQ=255)                                                                       aTAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAagcgcagcgc                                                                             <  1:503450/150‑1 (MQ=255)                                                                                aaaaTATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAAt                                                                   >  1:415461/1‑151 (MQ=255)                                                                                   atatAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAAtttt                                                                >  1:204300/1‑151 (MQ=255)                                                                                    tataGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTa                                                               >  2:518664/1‑151 (MQ=255)                                                                                     ataGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTAc                                                              <  1:7298/151‑1 (MQ=255)                                                                                         aaGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACAt                                                            <  1:569657/149‑1 (MQ=255)                                                                                               tGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCAcc                                                    <  2:425741/151‑1 (MQ=255)                                                                                                gAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCAccg                                                   >  2:349564/1‑150 (MQ=255)                                                                                                     aaaCTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCAc                                                     >  1:458227/1‑144 (MQ=255)                                                                                                     aaaCTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATAAGGCAATTTTACATTTGTCAc                                                     >  2:457908/1‑144 (MQ=255)                                                                                                         tctACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAg                                          <  2:386883/151‑1 (MQ=255)                                                                                                                                           gcgTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGttat        >  1:62011/1‑151 (MQ=255)                                                                                                                                            agTAAACACCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATATGTCACCTGTCTCAAAGGAGTCTTATGACTCCCTATCAATCAACGCGttatt       >  1:514626/2‑151 (MQ=255)                                                                                                                                             gTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTatcaa                    <  1:216225/137‑1 (MQ=255)                                                                                                                                             gTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTatcaa                    >  2:216280/1‑137 (MQ=255)                                                                                                                                                  cGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCg  >  2:645907/1‑150 (MQ=255)                                                                                                                                                    |                                                                                                                                                    ATAGTAAGGTGTCAGAAAGATGACAAGGCGGTGACGGCGTGGGTGAGGGAAAATGGGAGATGGGGCACGGATAAGCGGGAAAATATAGAAGGTCTGAATCAAACTCTACAGATTGCTCATCGTTTCATGCCGGATGCGGCGTAAACGCCTTATCAGGCCTACAAGATCGTGCAAATTCAACATATTGCCACTCACCCAGTAGGCCTGATAAGCGCAGCGCATCAGGCAATTTTACATTTGTCACCTGTCTCAAAGGAGTCTTTTGACTCCCTATCAATCAACGTGTTATTACCCG  >  NC_000913/3592436‑3592730

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.