Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,665,7020CA63.5% 3.2 / 108.0 107A37S (GCG→TCG) gadXacid resistance regulon transcriptional activator; autoactivator
Reads supporting (aligned to +/- strand):  ref base C (25/14);  new base A (0/68);  total (25/82)
Fisher's exact test for biased strand distribution p-value = 9.07e-15
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.88e-07

Only 100 of 108 total aligned reads displayed.

GTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAAT  >  NC_000913/3665553‑3665851
                                                                                                                                                       |                                                                                                                                                      
gTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCa                                                                                                                                                       >  2:148397/1‑151 (MQ=255)
gTGATGAACGAGTAATGAAGAAACTTTTTTATGCGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCa                                                                                                                                                       >  1:113845/1‑151 (MQ=255)
      aaCGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGCCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCaaaacca                                                                                                                                                 <  1:1206365/151‑4 (MQ=255)
        cGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑Ag                                                                                                                                              >  1:136732/1‑151 (MQ=255)
        cGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑Ag                                                                                                                                              >  2:1390123/1‑151 (MQ=255)
         gAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑Agg                                                                                                                                             >  2:1432270/1‑151 (MQ=255)
            tAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTc                                                                                                                                           <  1:46309/150‑1 (MQ=255)
            tAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTc                                                                                                                                           <  1:927755/150‑1 (MQ=255)
                      aCTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTaa                                                                                                                                >  1:1484678/1‑151 (MQ=255)
                       cTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTaaa                                                                                                                               >  2:1155325/1‑151 (MQ=255)
                                   cATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATAtt                                                                                                                    >  2:772811/1‑150 (MQ=255)
                                   cATAAATATTTAATCCCTCCTCCTTGAGCATCGGGAAAAAAAATAAAAGCGTTCCCTTTG‑ACACAAATAAAAAATTTTCAACCCACTTATCTCCCCGATTTT‑GGCTTCCACCCGCAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTc                                                                                                                   <  2:66550/151‑1 (MQ=255)
                                   aaTGAAGATTTAATCCCCCCTCCTTGAGCATGGGGAAAAAAAATAAAGGCGTTCCCTTTG‑ACACAAAAAAAAAATTTTCAACACCCTTATCTCCTCAATTTT‑GGCTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTc                                                                                                                   <  2:614638/150‑1 (MQ=255)
                                     tGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCa                                                                                                                  >  1:712723/1‑150 (MQ=255)
                                      aaaGTTTTAATGCCTCCTCCTGGACCATGGGAAAAAAAAATGAAGGCGTGTCCCTTG‑ACACGAATAAAAAATTTTAAACACTCTTATTTACTCGATTTT‑GGCTTCCACCCCAAAAACCC‑AGGTCTCCGCCATTAAAATAGCGATATTCAcc                                                                                                                <  1:590127/150‑1 (MQ=255)
                                       aataTTAAAGGCCCCCCCCTTAAGCATCGGGAAAAAAAATGAAAGCGTGCCCTTTG‑ACCCAAATAAAAAATTTCCAACACACTTATCTACCCAATTTT‑GGCTTCCATCCCAAAAACCC‑AGGTCCCCGCCATTAAAATAGCGATATTCAcc                                                                                                                <  2:812114/147‑1 (MQ=255)
                                             tactcccccctcctTGAACTGCGGAAAAAATAAATAAAGCTTCTCCCTTG‑ACAAAAATACAAAATTTTCAACCCTCTTTTCTCCTCGATTTG‑GTCTTGCACCCGAAAAAACC‑AGCTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:402582/143‑1 (MQ=255)
                                             taacgccccccactTGAGAATCGGAAAAAAAAATAAAGGCGTTTCCCTTG‑ACACAAATAAAAAATTTACACCCCCTTTATCTACTGAATTTT‑GGTTTCCACCCCAAAAAACA‑AGTTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:777078/139‑1 (MQ=255)
                                             tAATGCCTCCTCCTTGAGCATCGGGAAAAATAATGAAAGCGTGTCCTTTG‑ACACAAAAAAAAAATTTCCAACCCCCTTACCTACTAAATTTT‑GGCTTCCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:552416/151‑1 (MQ=255)
                                             tAATGCCTCCTCCTGGACAATCGGAAGAAAAAATGAAGGCGTTTCCTTTG‑ACACGAATACAAAATTTTAAACACCTTTATCTACTAAAATTT‑GGCTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:187038/151‑1 (MQ=255)
                                             tAATGCCGCCTCCTGGAGCATCGGGAAAAAAAATAAAGGCGTGCCCTTTG‑ACGCAAATACAAAATTTTCAACCCACTTATATTCTCAATTTT‑GGCTTGCATCCGAAAAAACC‑GGGTACCCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:331661/151‑1 (MQ=255)
                                             tAATCCCCCCTCTTTGGGCATCGGGAGAAATAATGAAAGTGGGCCCCTTG‑AAACAAATAAAAAATTTCAAACACACTTATCTACTCGATTTT‑GGCTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:846977/151‑1 (MQ=255)
                                             tAATCCCCCCTCCTGGAGCAGGGGGAAAAAAAATGAAAGCGTGTCCCTTG‑ACACAAAAAAAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCACCCAAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  2:131407/151‑1 (MQ=255)
                                             aaaTCCCTCCTCCTTGACAATCGGAAAAAAAAATGAACGTTTTCCCCTTA‑AAAAAAAAAAAAAATTTAAAACACCTTTATCTCCACAATTTT‑GGCTTCCACCCAAAAAAACC‑GGTCCACCGCCATTAAAATAGCGATATTCACCATTAAcc                                                                                                         <  1:1177801/150‑1 (MQ=255)
                                              aaTGCCTCCTCATAATACATGGGAAAAAATAATAAAAGCTTGTCCCTTG‑ACACAAAACCAAAATTTTAAACACACTTCTCTACGCAATTTT‑GTCTTCCACCCACAAAACCC‑AGTTCTCCGCCATTAAAATAGCGATATTCACCATTAACCa                                                                                                        <  1:1082223/151‑1 (MQ=255)
                                                tGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATg                                                                                                      >  1:610469/1‑151 (MQ=255)
                                                tGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATg                                                                                                      >  2:800859/1‑151 (MQ=255)
                                                  cccccccctTGAGCATGGGGAAAAAAAAAAAAAGCGTGTCCTTTG‑AAAAAAAAAAAAAATTTTCAACACACTTATCTCCTCAAATTT‑GGCTTGCATCCGAAAAAACC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATgg                                                                                                     <  2:1343379/144‑1 (MQ=255)
                                                    ccctcctTGAGCATCGGGAAAAAAAAGAAAAGCTTGCCCTTTG‑ACACAAATAAAAAATTTTCACCCCCCTTTTCTACTCAAATTT‑GGCTTGCATCCGAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTga                                                                                                  <  2:540316/150‑1 (MQ=255)
                                                     cctcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTgag                                                                                                 >  1:78982/1‑151 (MQ=255)
                                                       tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                               >  2:1315788/1‑151 (MQ=255)
                                                       tcctTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGaa                                                                                               >  2:472187/1‑151 (MQ=255)
                                                        cctTGAGAATGGGAAAAAAAAATGAAAGCTTGTCCTTTG‑CCACAAAAACAAAATTTCCAACCCATTTATCTACTAAATTTT‑GGTTTCCACCCAAAAAACCC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                                                                                              <  1:557831/151‑1 (MQ=255)
                                                        cctTGACCAGGGGGAAAAAAAATAAAAGCGTGCCCCTTG‑ACACAAAAAAAAAATTTTCAACACCTTTATCTACTCGAATTG‑GGTTTGCACCCAAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAat                                                                                              <  2:895833/151‑1 (MQ=255)
                                                             accttCGGGAAAAATAAGCACAGCATGTCCTGAT‑ACACGATTACAAATTTTACACCCCATTTATCTACACGATTTG‑GGCTTGCATCCGCAAAAACA‑GGTTAACCGCCATTAAAATAGCGATATTCAACATTAACCATGGTGAGAATATAtt                                                                                         <  1:331826/147‑1 (MQ=255)
                                                             aGCATCGGAAAAAATAATGAAAGCGTTCCCTTTG‑ACACGAATAAAAAATTTACAACACACTTACCTACTCAATTGG‑GGCTTGCACCCAAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAatatat                                                                                          <  1:1431540/150‑1 (MQ=255)
                                                              gCATGGGGAAAAAAAATAAAAGCGTGTCCCTTG‑ACACGAATAAAAATTTTTCAACACACTTATCTACTCAAATTT‑GGCTTGCACCCAAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:1413064/150‑1 (MQ=255)
                                                               catgggaaaaaaTAATGAAGGCGTGCCCTTTA‑CCACGAATAAAAAATTTAAACCACCCTTATCTTCCCAATTTT‑GGCTTCCACCCGCAAAACCC‑GGGGCGCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTa                                                                                       <  2:226698/142‑1 (MQ=255)
                                                               catgggaaaaaaTAATAAACGCGTCTCCCTGA‑ACACAAAAAAAAAATTTTCAACACAATTATCTACTCAATTTG‑GGTTTGCACCCGAAAAAACC‑AGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  1:912956/140‑1 (MQ=255)
                                                               cagggggAAAAATAATAAAAGGGTGTCCCTTG‑ACACAAAAAAAAAATTTTCAACCCACTTATCTACTCGAATTT‑GGCTTGCACCCGAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:309685/145‑1 (MQ=255)
                                                               cagcgagaaaaaTAATGAAGGCTTGTCCTTTG‑AAACAAATACAAAATTTCCAACCCACTTACCTACTAAATTTT‑GGTTTACCCCCGAAAAACCC‑GGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  1:372435/140‑1 (MQ=255)
                                                               cATGGGGAAAAAAAAGAAAAGCGTGTCCCTTG‑ACACAAATAAAAAATTTTCAACCCACTTATCTACTCGATTTT‑GGCTTGCACCCCAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  2:163567/149‑1 (MQ=255)
                                                               cATCGGGAAAAATAATGAAAGCGTTTCCCTTG‑ACACGAATAAAAAATTTTAAACACACTTATCTCCTCGATTTT‑GGTTTGCACCCAAAAAAACA‑GGGACACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATAtt                                                                                         <  1:1032133/149‑1 (MQ=255)
                                                                 tCGGGAAAAAAAAAGAAAGCGTGCCCTTTG‑ACACAAAAAAAAAATTTTCAACACATTTATCTCCTGGAATTT‑GGCTTCCACCCACAAAAACC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                     <  2:751713/151‑1 (MQ=255)
                                                                 cgggaaaaaaTAATAAAAGCGTCTCCCTTG‑ACACAAATAAAAAATTTCAACCACCCTTATCTACTAAATTTG‑GGTTTCCACCAGAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATg                                                                                     <  1:718315/144‑1 (MQ=255)
                                                                  cggaaaaaaaaaTAAAAGCGTTTCCCTTG‑CCACAAATACAAATTTTTAAACACCCTTATCTCCCCAAATTT‑GGCTTGCACCCAAAAAACCC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    <  2:683306/145‑1 (MQ=255)
                                                                   gagagaAGAAATGAAGGCTTGCCCCTGG‑ACAAGAATAAAAAATTGTCAACCTACTTATCTACCCAATTTT‑GGCTTCCACCCAAAAAAACG‑GGTCCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGt                                                                                    <  1:321054/148‑1 (MQ=255)
                                                                     gaaaaaaaaTAAAAGCGTGCCCCTTA‑ACACAAAAACAAAATTTACAACCCATTTATCTCCTCAAATTT‑GGTTTGCATCCCAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCt                                                                                  <  2:963260/147‑1 (MQ=255)
                                                                           aaatGAAAGCTTTTCCATTG‑ACACGAATAAAAAATTTCCAACACACTTATCTTCCAAAATTT‑GGTTTGCACCCGAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATAc                                                                           <  1:337692/150‑1 (MQ=255)
                                                                                 aaagcggccccTTGAACACAAAAAAAAAATTTACAACCCACTTATCTACGCGATTTG‑GGTTTACACCCGAAAAAACC‑AGGACCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAAt                                                                      <  2:841944/143‑1 (MQ=255)
                                                                                  aGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTa                                                                    >  2:1387095/1‑151 (MQ=255)
                                                                                      tttCCTTTG‑ACACGAATAAAAAATTTTCAACACCCTTTTCTCATCAATTTT‑GCCTTGCATCCGCAAAAACC‑GGGTACCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  1:904451/148‑1 (MQ=255)
                                                                                      tgccccTTG‑ACACGAAAAAAAAATTTTCAACACACTTATCTACTCAAATTT‑GGCTTGCACCCGAAAAAACC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  2:162887/147‑1 (MQ=255)
                                                                                      tgccccTTG‑ACACAAATAAAAAATTTTCAACCCTTTTATCTACTCAATTTT‑GGCTTGCATCCGAAAAACCC‑GGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  2:763045/147‑1 (MQ=255)
                                                                                       ttcccctgaacacAAAAAAAAAATTTAAAACACACTTATCTCCTCAAATTT‑GGTTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  2:738931/141‑1 (MQ=255)
                                                                                       ttCCCTTG‑ACACGAATAAAAAATTTTCACCACCCTTATCTACTCAAATTT‑GGCTTGCATCCAAAAAACCG‑AGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACaa                                                               <  1:1434849/150‑1 (MQ=255)
                                                                                       tgtcctgtgaagcGAATAAAAAATTTTAAACAGCCTTATCTACCAAAATTT‑GGTTTGAATCCGAAAAAACC‑GGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGAc                                                                 <  1:1355855/138‑1 (MQ=255)
                                                                                         cccTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTTCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAtt                                                             >  1:1366654/1‑151 (MQ=255)
                                                                                         cccTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAAtt                                                             >  2:1110676/1‑151 (MQ=255)
                                                                                            tttaacacAAAAAAAAAATTTCCACCCCCTTTATCTACCCAAATTG‑GGCTTGCACCCAAAAAACCC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTcc                                                           <  2:610763/147‑1 (MQ=255)
                                                                                                ccacaaaaaaaaaaTTTCAAACACACTTTTCTACAAAAATTT‑GTCTGGCCCCCGAAAAACCA‑AGTTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                                       <  2:1500765/141‑1 (MQ=255)
                                                                                                acacGAATAAAAATTTTTCAACCCCTTTATCTACTCAATTTT‑GGCTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                                       <  2:1123734/151‑1 (MQ=255)
                                                                                                acaaGAAAAAAAAATTTCCAACCCCCTATCCTAC‑CAAATTTGGGCTGGCACCCGAAAAAACC‑ATTGCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATg                                                       <  2:1346085/151‑1 (MQ=255)
                                                                                                 cacaAATACAAAATTTTCAACACACTTATCCCCTCGAATTT‑GGCTTGCACCCACAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGt                                                      <  2:810021/151‑1 (MQ=255)
                                                                                                   aaaacaaaaaaTTTACAACACACTTATCTCCTAGATTTT‑GTCTTGCATCCAAAAAACCC‑AGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg                                                    <  1:202526/144‑1 (MQ=255)
                                                                                                   aaaaaaaaaaaTTTTCAACACACTTATCTACTCAAATTT‑GGTTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAg                                                    <  2:570570/144‑1 (MQ=255)
                                                                                                     aaTACAAAATTTTCAACCCCCTTACCTACTAGATTTT‑GGCTTCCCCCCAAAAAAACA‑AGGTCCCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTg                                                  <  2:760725/151‑1 (MQ=255)
                                                                                                     aaTAAAAAATTTAAAACACCTTTATCTACACAATTTT‑GGCTTGCACCCGAAAAAACC‑GGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTg                                                  <  1:1113465/151‑1 (MQ=255)
                                                                                                            aattacaaaCACTCTAATCAACAGGAATTT‑GGCTGGCACCGAAAAAAACC‑AGGTCCCCGCCATTAAAATAGCGAGATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCAt                                           <  2:238471/144‑1 (MQ=255)
                                                                                                               tttCACCACACTTATCCCCCCGATTTT‑GGCTTACACCCAAAAAAACC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                                        <  2:468832/151‑1 (MQ=255)
                                                                                                               tttAAACCCCCTTATCTACTAAATTTT‑GGCTGGCACCCGAAAAACCC‑AGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGt                                        <  1:403358/151‑1 (MQ=255)
                                                                                                                 caaccacacTTATCTAATCGATTTT‑GTCTTCCTTCCACAAAACCC‑GGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTg                                      <  1:124658/147‑1 (MQ=255)
                                                                                                                 acaccacacTTATCTACGCAATTTT‑GGTTTGCACCCAAAAAACCG‑GGGCCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTg                                      <  1:1315136/147‑1 (MQ=255)
                                                                                                                      ccccTTATCTCCTCAATTTT‑GGTTTCAACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTa                                 <  1:869998/148‑1 (MQ=255)
                                                                                                                      ccccTTATCTACTCAAATTT‑GTCTTCCACCCGAAAAAACG‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTa                                 <  1:1110150/148‑1 (MQ=255)
                                                                                                                      acatTTATCTACTCAAATTT‑GGCTTGCATCCAAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTa                                 <  2:551273/151‑1 (MQ=255)
                                                                                                                       cccTTATCTACTAAAATTT‑GGCTTGCATCCAAAAAAACC‑GAGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                <  1:1103366/149‑1 (MQ=255)
                                                                                                                       cacTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  1:704449/1‑151 (MQ=255)
                                                                                                                       cacTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  2:537321/1‑151 (MQ=255)
                                                                                                                       cacTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  2:247856/1‑151 (MQ=255)
                                                                                                                       cacTTATCTACTCGAATTT‑GGCATGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTaa                                >  1:1230807/1‑151 (MQ=255)
                                                                                                                          ttttCTACTCAATTTT‑GTCTTGCACCAGAAAAAACC‑GGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                             <  1:1372362/148‑1 (MQ=255)
                                                                                                                          ttATCTCCTCAATTTT‑GGCTTGCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                             <  2:1167144/151‑1 (MQ=255)
                                                                                                                          ttATCTCCTAAATTTT‑GGTTTGCCCCCGAAAAACCC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                             <  2:489090/151‑1 (MQ=255)
                                                                                                                          ttATCTCCTAAAATTT‑GGTTGGCACCCGAAAAAACC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAatat                             <  1:1428240/151‑1 (MQ=255)
                                                                                                                               tactaaaaTTT‑GGCTTGCACCCCAAAAAACC‑GGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt                        <  2:504169/145‑1 (MQ=255)
                                                                                                                               tACTCGAATTT‑GGCTTGCATCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt                        <  2:55692/151‑1 (MQ=255)
                                                                                                                               tACTAGATTTG‑GGCTTCCA‑CCCCAAAAACCGAGGTAACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACAt                        <  1:328045/151‑1 (MQ=255)
                                                                                                                                 cTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATaa                      >  1:1492429/1‑151 (MQ=255)
                                                                                                                                     aaTTT‑GGTTTGCACCCGAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat                  <  2:1485461/151‑1 (MQ=255)
                                                                                                                                     aaTTT‑GGCTGGCCTCAGAAAAAACG‑AGTCCGCCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACat                  <  1:254652/151‑1 (MQ=255)
                                                                                                                                            gCTTGCACCCAAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  1:86695/150‑1 (MQ=255)
                                                                                                                                            gCTTCCATCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  2:136776/150‑1 (MQ=255)
                                                                                                                                            ccTTGCACCCGAAAAAACC‑AGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTAc             <  2:1361255/149‑1 (MQ=255)
                                                                                                                                             tttGCATCCGAAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTg           <  1:148352/150‑1 (MQ=255)
                                                                                                                                             cTTCCACCCGAAAAACCC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTg           <  2:170980/151‑1 (MQ=255)
                                                                                                                                                ccacccGAAAAAACC‑AGTTCTCCTCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACGTAATATTACATAAACATATTACTGttt        <  1:1488675/147‑1 (MQ=255)
                                                                                                                                                     cacAAAACCA‑AGTTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTaa   <  1:1223129/149‑1 (MQ=255)
                                                                                                                                                     cGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTaa   >  1:1264949/1‑151 (MQ=255)
                                                                                                                                                      gCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAAt  >  2:158090/1‑151 (MQ=255)
                                                                                                                                                       |                                                                                                                                                      
GTGATGAACGAGTAATGAAGAAACTTTTTTATGTGCATGAAGATTTAATGCCTCCTCCTTGAGCATCGGGAGAAATAATGAAAGCGTGTCCCTTG‑ACACGAATACAAAATTTTCAACACACTTATCTACTCGAATTT‑GGCTTGCATCCGCAAAAACC‑AGGTCACCGCCATTAAAATAGCGATATTCACCATTAACCATGGTGAGAATATATTTATGTCTTGCATACGCAATTAGACAATTCCCATGTAGTGATTGCATAGTTGACTTAATATTACATAAACATATTACTGTTTATTAAT  >  NC_000913/3665553‑3665851

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑