| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 4373286 = | 38 (1.550) | 6 (0.240) | 3/184 | 2.4 | 13.6% | noncoding (90/99 nt) | RIP328 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP328 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site |
| ? | NC_000913 | 4374508 = | NA (NA) | noncoding (11/99 nt) | RIP329 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | RIP329 (repetitive extragenic palindromic) element, contains 2 REP sequences and 1 IHF site | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
AATTATTGGTGTTAGCTATATAAAAAGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGC > NC_000913/4374370‑4374644 | gcgcgctgcatcacttacgtgttcaatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcgg < 2:512819‑M2/1‑1 (MQ=255)aaTTATTGGTGTTAGCTATATAAAAAGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGTTCTTGCCGGATGCAg > 1:10542/1‑139 (MQ=255) cgctgcatcacttacgtgttcaatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcgGCGt > 2:597574‑M2/136‑139 (MQ=255) cgctgcatcacttacgtgttcaatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcgGCGt > 2:354026‑M2/136‑139 (MQ=255) tAGCTATATGAAAAGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCtt > 1:115284/1‑139 (MQ=255) aGCTATATAAAAAGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTa > 1:579453/1‑139 (MQ=255) tataAAAAGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCgg > 2:72210/1‑139 (MQ=255) gtgttcaatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCgg > 1:75965‑M2/121‑139 (MQ=255) gtgttcaatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCgg > 2:299851‑M2/121‑139 (MQ=255) ttcaatccaccagcaaaactgcaccacaggcgaaataatctcatatttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcgGCGTAAACGCCTTATCCGGCCt > 2:448520‑M2/118‑139 (MQ=255) tcaatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcgGCGTAAACGCCTTATCCGGCCTa > 2:596560‑M2/117‑139 (MQ=255) aaaGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTAc > 1:154069/1‑139 (MQ=255) aatccaccagcaaaactgcaccacaggcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCGGCCTACa > 1:504549‑M2/115‑139 (MQ=255) tAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGtt < 2:505207/139‑1 (MQ=255) tAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGtt < 1:158535/139‑1 (MQ=255) aacaacAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACg > 2:383618/1‑119 (MQ=255) aacaacAGCAATGCAGATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACg < 1:383618/119‑1 (MQ=255) caacaGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCg > 2:155109/1‑126 (MQ=255) caacaGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCg < 1:155109/126‑1 (MQ=255) gCAATGCATATGGATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCaa > 2:413292/1‑139 (MQ=255) cAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCaaa > 1:372906/1‑139 (MQ=255) gAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATc < 2:555822/131‑1 (MQ=255) gAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATc > 1:555822/1‑131 (MQ=255) gcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttca < 2:75965‑M2/51‑1 (MQ=255) gcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttca < 2:384997‑M2/51‑1 (MQ=255) gcgaaataatctcatctttgctaatgcgaggctggagccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttca < 1:299851‑M2/51‑1 (MQ=255) atTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTAt < 1:521443/102‑1 (MQ=255) atTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTAt > 2:521443/1‑102 (MQ=255) atTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttcaa > 2:253867/1‑139 (MQ=255) aaGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:368673/139‑1 (MQ=255) aaGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 2:624456/139‑1 (MQ=255) aaGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 2:579453/139‑1 (MQ=255) aaGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:253867/139‑1 (MQ=255) aaGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:72210/139‑1 (MQ=255) tATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATg < 2:372906/139‑1 (MQ=255) tGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:472318/132‑1 (MQ=255) tGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 2:472318/1‑132 (MQ=255) tGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTa > 2:308078/1‑139 (MQ=255) aaCGGGCAAAGGTTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGc < 1:413292/139‑1 (MQ=255) cGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:134930/127‑1 (MQ=255) cGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 2:134930/1‑127 (MQ=255) gggCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 2:252727/1‑126 (MQ=255) gggCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:252727/126‑1 (MQ=255) ggCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTa < 2:155995/74‑1 (MQ=255) ggCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTa > 1:155995/1‑74 (MQ=255) cAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTa < 1:502048/130‑1 (MQ=255) cAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTa > 2:502048/1‑130 (MQ=255) aTTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 2:548278/118‑1 (MQ=255) aTTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 1:548278/1‑118 (MQ=255) cccAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCa > 2:384244/1‑139 (MQ=255) ccAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGAt > 2:217867/1‑123 (MQ=255) ccAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGAt < 1:217867/123‑1 (MQ=255) ccatccagcctgaaatgactgataacgtgatcgttggtcatgccggatgcaGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTAAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAgg < 2:504549‑M2/88‑1 (MQ=255) gcctgaaatgactgataacgtgatcgttggtcatgccggatgcgGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttca > 1:363327‑M2/45‑95 (MQ=255) gcctgaaatgactgataacgtgaacgttggtcatgccggatgcgGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCAttcaatttca < 2:363327‑M2/51‑1 (MQ=255) ggTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:149925/94‑1 (MQ=255) ggTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 2:149925/1‑94 (MQ=255) ggTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 1:189681/94‑1 (MQ=255) ggTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 2:189681/1‑94 (MQ=255) tGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTaa < 2:154069/139‑1 (MQ=255) cTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa > 1:334366/1‑84 (MQ=255) cTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCa < 2:334366/84‑1 (MQ=255) ttGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTg > 1:434842/1‑139 (MQ=255) tGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGt > 2:393063/1‑139 (MQ=255) gCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAAttt < 1:254893/119‑1 (MQ=255) gCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAAttt > 2:254893/1‑119 (MQ=255) gttgCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCa < 2:481672/139‑1 (MQ=255) cAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGc > 1:353518/1‑139 (MQ=255) | AATTATTGGTGTTAGCTATATAAAAAGTAACAACAGCAATGCATATGAATAATTAAAGGTTATGCAACGGGCAAAGATTAAACTTCCCAGTTTAATGACAGGTTGCTGTACTTGCGTTTGTTGCTCTTGCCGGATGCAGCGTAAACGCCTTATCCGGCCTACAGTTCATTGCAAATCCATTCAATTTCAATGCACGATGTAGGCCTGATAAGCGTAGCGAATCAGGCAATTTTAATGTTTAACTTCCCTGTTTAATCAGTTACTGCTGGCGTAGC > NC_000913/4374370‑4374644 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |