BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,209,825	(A)_6→7	coding (141/555 nt)	pinE →	e14 prophage, site‑specific DNA recombinase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,209,819	1	.	A	100.0%	143.9 / NA	42	L45L (CTG→CTA)	pinE	e14 prophage, site‑specific DNA recombinase
Reads supporting (aligned to +/- strand): ref base . (0/0); new base A (23/19); total (23/19)

TATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTG‑AAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGCGAACGAGGCATCAACTTTCGTA  >  NC_000913/1209690‑1209949

tATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTG‑aaaaaaact                                                                                                                           >  2:109015/1‑136 (MQ=255)

  ttGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTG‑aaaaaaactgc                                                                                                                         >  1:4419/1‑134 (MQ=255)

   tGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCt                                                                                                                         >  1:798/1‑139 (MQ=255)

         tGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAgg                                                                                                                     <  1:442705/137‑1 (MQ=255)

         tGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAgg                                                                                                                     >  2:442705/1‑137 (MQ=255)

                   tCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCa                                                                                                         >  2:60244/1‑139 (MQ=255)

                           tGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCgg                                                                                                           >  2:126099/1‑129 (MQ=255)

                           tGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCgg                                                                                                           <  1:126099/129‑1 (MQ=255)

                                aGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTgg                                                                                            <  2:440786/139‑1 (MQ=255)

                                      aacaTCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGAGAAGCGGCAGAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTGAGGACATTATCGGCAGGTGACACTCTGGTTGTCt                                                                                      <  2:107790/136‑1 (MQ=255)

                                                 cGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGAt                                                                           >  1:198101/1‑139 (MQ=255)

                                                   tAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCg                                                                         >  2:310282/1‑139 (MQ=255)

                                                   tAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCg                                                                         >  1:5703/1‑139 (MQ=255)

                                                    aaTGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTAT‑GGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGc                                                                       >  1:420954/1‑139 (MQ=255)

                                                      tGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCt                                                                      <  1:60244/139‑1 (MQ=255)

                                                        cgcTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCt                                                                                                                         <  2:435190/86‑1 (MQ=255)

                                                        cgcTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCt                                                                                                                         >  1:435190/1‑86 (MQ=255)

                                                         gcTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTggg                                                                   <  2:798/139‑1 (MQ=255)

                                                           tGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTAT‑GGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCg                                                                <  2:420954/139‑1 (MQ=255)

                                                             aaCTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCgt                                                               >  1:133589/1‑139 (MQ=255)

                                                                  tgCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTc                                                                                                                        <  1:335610/77‑1 (MQ=255)

                                                                  tgCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTc                                                                                                                        >  2:335610/1‑77 (MQ=255)

                                                                  tgCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAg                                                                                 <  1:106017/116‑1 (MQ=255)

                                                                  tgCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAg                                                                                 >  2:106017/1‑116 (MQ=255)

                                                                  tgCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTAt                                                          >  1:396732/1‑139 (MQ=255)

                                                                  tgCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTAt                                                          >  1:210119/1‑139 (MQ=255)

                                                                    cAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGc                                                        <  2:210119/139‑1 (MQ=255)

                                                                       gATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCGGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGc                                                     >  2:165874/1‑139 (MQ=255)

                                                                        aTGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCa                                                    <  2:4419/139‑1 (MQ=255)

                                                                        aTGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCa                                                    <  2:133589/139‑1 (MQ=255)

                                                                            gAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCtt                                                >  2:166904/1‑139 (MQ=255)

                                                                            gAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCtt                                                >  2:454775/1‑139 (MQ=255)

                                                                              gCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGt                                              <  1:109015/139‑1 (MQ=255)

                                                                                 gATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGt                                           >  1:271647/1‑139 (MQ=255)

                                                                                   tttttGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGc                                         <  1:454775/139‑1 (MQ=255)

                                                                                   tttttGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGc                                         <  2:271647/139‑1 (MQ=255)

                                                                                                        gCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCg                                                                <  1:253310/95‑1 (MQ=255)

                                                                                                        gCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCg                                                                >  2:253310/1‑95 (MQ=255)

                                                                                                        gCACAAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGCGAAc                    >  2:154761/1‑139 (MQ=255)

                                                                                                         cacaAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGCGAACg                   <  1:154761/139‑1 (MQ=255)

                                                                                                          acaAAGTCCGAAAGGCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGCGAACGa                  >  2:252127/1‑139 (MQ=255)

                                                                                                                        gCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCt                                                                      >  2:344482/1‑73 (MQ=255)

                                                                                                                        gCCGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCt                                                                      <  1:344482/73‑1 (MQ=255)

                                                                                                                          cGGGACTGAAAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGCGAACGAGGCATCAACTTTCGTa  >  1:218509/1‑139 (MQ=255)

TATTGGCTATGTACGCGTATCAACAAATGACCAGAACACAGATCTACAACGTAATGCGCTGAACTGTGCAGGATGCGAGCTGATTTTTGAAGACAAGATAAGCGGCACAAAGTCCGAAAGGCCGGGACTG‑AAAAAACTGCTCAGGACATTATCGGCAGGTGACACTCTGGTTGTCTGGAAGCTGGATCGGCTGGGGCGTAGTATGCGGCATCTTGTCGTGCTGGTGGAGGAGTTGCGCGAACGAGGCATCAACTTTCGTA  >  NC_000913/1209690‑1209949

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 34 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`