| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,035,112 | T→C | pseudogene (400/531 nt) | yedS → | pseudogene, outer membrane protein homology, putative outer membrane protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,035,112 | 0 | T | C | 100.0% | 92.2 / NA | 25 | pseudogene (400/531 nt) | yedS | pseudogene, outer membrane protein homology, putative outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (12/13); total (12/13) | |||||||||||
TTTGGCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACTACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTT > NC_000913/2034977‑2035239 | ttgggCCTGCGCCCGTCCATCGCTTACCTGCAATCTAGAGGTAAGGATTTGGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTaccact < 2:36135/136‑1 (MQ=255) tGGCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTc > 2:409006/1‑139 (MQ=255) gCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTcaa > 1:313162/1‑139 (MQ=255) cccGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAAc < 1:409006/139‑1 (MQ=255) cGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACAt < 1:447873/139‑1 (MQ=255) gTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATg > 2:26266/1‑139 (MQ=255) tCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCAc < 1:26266/139‑1 (MQ=255) gTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCa < 2:47886/138‑1 (MQ=255) gTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCa > 1:47886/1‑138 (MQ=255) aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATg < 2:406796/110‑1 (MQ=255) aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATg > 1:406796/1‑110 (MQ=255) aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAAcat > 1:64591/1‑137 (MQ=255) aGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACct > 1:158013/1‑139 (MQ=255) ggCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt < 2:158013/139‑1 (MQ=255) ggCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt < 2:313162/139‑1 (MQ=255) cGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCg < 1:189561/139‑1 (MQ=255) cTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTAc < 2:138353/125‑1 (MQ=255) cTGGTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTAc > 1:138353/1‑125 (MQ=255) gTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt > 1:141220/1‑93 (MQ=255) gTTAAATACGTTGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGAt < 2:141220/93‑1 (MQ=255) ttGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACctgctg > 2:8076/1‑71 (MQ=255) ttGATATTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACctgctg < 1:8076/71‑1 (MQ=255) tatTGGTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTAc < 2:64591/139‑1 (MQ=255) gTGCGACCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGtt > 1:117916/1‑139 (MQ=255) aCCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAg < 2:135017/124‑1 (MQ=255) aCCTACCACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAg > 1:135017/1‑124 (MQ=255) | TTTGGCCTGCGCCCGTCCATCGCTTACCTGCAATCTAAAGGTAAGGATTTAGGCGGTTGGGCTCATGACGGCAACGGCGACCCACGTTACACCAATAAAGATCTGGTTAAATACGTTGATATTGGTGCGACCTACTACTTCAACAAAAACATGTCCACCTATGTTGATTACAAAATCAACCTGCTGGACAACGACGATGACTTCTACGAAGCAAACGGCATCGCTACCGATGATATCGTTGCTGTGGGCTTAGTCTACCAGTT > NC_000913/2034977‑2035239 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |