| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 585,420 | Δ1 bp | coding (214/954 nt) | ompT ← | DLP12 prophage, outer membrane protease VII, outer membrane protein 3b |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 585,420 | 0 | T | . | 100.0% | 38.6 / NA | 10 | coding (214/954 nt) | ompT | DLP12 prophage, outer membrane protease VII, outer membrane protein 3b |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base . (4/6); total (4/6) | |||||||||||
TCCAGGTTCCGGGGTTACTGGAATCCATCCAGTCCTGATCGACCATATTGCCACCTCGGCTGCCGAGAGTTGTCCAGCCAGCAGCCCCGATAGATATCTGGGGCATCAAATCCCAATTAATTGCACCTTTAATAATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGT > NC_000913/585288‑585552 | tCCAGGTTCCGGGGTTACTGGAATCCATCCAGTCCTGATCGACCATATTGCCACCTCGGCTGCCGAGAGTTGTCCAGCCAGCAGCCCCGATAGATATCTGGGGCATCAAATCCCAATTAATTGCACCTTTAA‑AATTGCa < 1:444669/139‑1 (MQ=255) cACCTCGGCTGCCGAGAGTTGTCCAGCCAGCAGCCCCGATAGATACCTGGGGCATCAAATCCCGATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCCTCg < 1:322905/139‑1 (MQ=255) gggCATCAAATCCCAATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCgg < 1:480319/78‑1 (MQ=255) gggCATCAAATCCCAATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCgg > 2:480319/1‑78 (MQ=255) aTCAAATCCCAATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTc < 2:168789/139‑1 (MQ=255) tCAAATCCCAATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCaga > 1:191490/1‑121 (MQ=255) tCAAATCCCAATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCaga < 2:191490/121‑1 (MQ=255) tCAAATCCCAATTAATTGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTcc > 2:471260/1‑139 (MQ=255) ttaattGCACCTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTAtgtt > 2:438953/1‑139 (MQ=255) ccTTTAA‑AATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGt < 1:438953/139‑1 (MQ=255) | TCCAGGTTCCGGGGTTACTGGAATCCATCCAGTCCTGATCGACCATATTGCCACCTCGGCTGCCGAGAGTTGTCCAGCCAGCAGCCCCGATAGATATCTGGGGCATCAAATCCCAATTAATTGCACCTTTAATAATTGCAGCGTTATTGAATTTCCAGTCGAGTTGACTGACTTTTCGGCCTCCTTCTTCGGCTAGATAAACACGCTCTTTTGTTTTTCCGCTCAGAGTTCCAAGACTAATGTCCGCATTTATGTTGTCAGGAGT > NC_000913/585288‑585552 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |