| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,689,476 | G→A | R11* (CGA→TGA) | yfhG ← | putative outer membrane protein modulating the QseEF response |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,689,476 | 0 | G | A | 100.0% | 74.9 / NA | 23 | R11* (CGA→TGA) | yfhG | putative outer membrane protein modulating the QseEF response |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (11/12); total (11/12) | |||||||||||
TAGTCAGCCAGTTGATAAACCGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCGGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAGCGTACATATCG > NC_000913/2689355‑2689597 | tAGTCAGCCAGTTGATAAACCGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGaa > 1:370010/1‑139 (MQ=255) gTCAGCCAGTTGATAAACCGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGaaaa > 1:412836/1‑139 (MQ=255) gTCAGCCAGTTGATAAACCGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGaaaa > 2:306671/1‑139 (MQ=255) cAGCCAGTTGATAAACCGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAAt < 2:370010/139‑1 (MQ=255) cGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCAcc < 2:412836/139‑1 (MQ=255) tttttCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACtt < 1:306671/139‑1 (MQ=255) tggctTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCa > 2:343234/1‑107 (MQ=255) tggctTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCa < 1:343234/107‑1 (MQ=255) gctTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAAttgttg > 1:209031/1‑139 (MQ=255) ttGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGAc < 1:156091/139‑1 (MQ=255) cTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCtgga > 1:2236/1‑139 (MQ=255) tGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGaa > 2:451046/1‑139 (MQ=255) ccAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAg > 2:30042/1‑109 (MQ=255) ccAGACATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAg < 1:30042/109‑1 (MQ=255) cATGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAg < 2:2236/139‑1 (MQ=255) cATGGCAGCCCTGCAAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAg < 1:29140/139‑1 (MQ=255) tGGCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAGCg < 1:451046/139‑1 (MQ=255) ggCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTa > 2:247645/1‑70 (MQ=255) ggCAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTa < 1:247645/70‑1 (MQ=255) cAGCCCTGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAGCGTAc > 2:356569/1‑139 (MQ=255) tGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTc < 2:263084/44‑1 (MQ=255) tGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTc > 1:263084/1‑44 (MQ=255) tGCCAGCCACAGCCGTCAGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAGCGTACATATCg < 2:209031/139‑1 (MQ=255) | TAGTCAGCCAGTTGATAAACCGGAATTTTTTCTTCTGCTGGCGTATCAATGGCTGGCTTATTGTGATTCTGCACGCAACCCAGCAATGCCAGACATGGCAGCCCTGCCAGCCACAGCCGTCGGGGCAATAATCGTTGAAAAATGTGTCGCATATTCACCAGACTTAAAGCCTATCCCAGTGGGCGTAATTGTTGCAGACAGTCTGGACATGGACAGCGCGGAGAAACCGGAGCGTACATATCG > NC_000913/2689355‑2689597 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |