| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,001,304 | (G)7→8 | coding (960/2259 nt) | xdhA → | xanthine dehydrogenase, molybdenum binding subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,001,297 | 1 | . | G | 95.2% | 145.2 / ‑0.1 | 42 | coding (953/2259 nt) | xdhA | xanthine dehydrogenase, molybdenum binding subunit |
| Reads supporting (aligned to +/- strand): ref base . (0/2); new base G (24/16); total (24/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.78e-01 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
ACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑GGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTT > NC_000913/3001164‑3001427 | aCCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑ggggg < 1:683524/139‑1 (MQ=255) cACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTc > 1:546357/1‑139 (MQ=255) ttGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATc > 1:692338/1‑139 (MQ=255) cGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATaa > 2:534654/1‑118 (MQ=255) cGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATaa < 1:534654/118‑1 (MQ=255) tataGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc > 2:320324/1‑139 (MQ=255) tataGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAc > 2:308708/1‑139 (MQ=255) ataGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAcc > 2:380904/1‑139 (MQ=255) ataGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAAcc > 2:317546/1‑139 (MQ=255) tCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTccc < 2:692338/139‑1 (MQ=255) tGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGAc < 1:86509/119‑1 (MQ=255) tGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGAc > 2:86509/1‑119 (MQ=255) tGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCt > 2:400997/1‑139 (MQ=255) ggATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTc > 2:425140/1‑139 (MQ=255) gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCt > 1:475826/1‑76 (MQ=255) gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCg > 2:277557/1‑139 (MQ=255) gATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑GGGGGAGGAATAAAGTCGCt < 2:475826/76‑1 (MQ=255) tCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTgg > 2:121251/1‑139 (MQ=255) cTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGt > 2:584493/1‑139 (MQ=255) cTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTa > 1:724992/1‑95 (MQ=255) cTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTa < 2:724992/95‑1 (MQ=255) aaCACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg < 1:320324/139‑1 (MQ=255) aaCACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑GGGGGAGGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg < 1:415184/139‑1 (MQ=255) gcgcTTCTGCATCTCACGGGCACTCCATCGCTTCTGC‑gg < 2:466481/39‑1 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATAcc > 1:587454/1‑108 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATAcc < 2:587454/108‑1 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGtt > 1:713747/1‑139 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGtt > 1:42105/1‑139 (MQ=255) gcgcTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑gg > 1:466481/1‑39 (MQ=255) aTCTCACGGGCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGcc < 1:425140/139‑1 (MQ=255) ggCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg > 1:415994/1‑114 (MQ=255) ggCACTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg < 2:415994/114‑1 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTtgtg > 2:770330/1‑54 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTtgtg < 1:770330/54‑1 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGTCCTg < 1:355793/79‑1 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGTCCTg > 2:355793/1‑79 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg < 2:36279/110‑1 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATg > 1:36279/1‑110 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCg > 2:208972/1‑112 (MQ=255) cTCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCg < 1:208972/112‑1 (MQ=255) tCCATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTAttt < 1:277557/139‑1 (MQ=255) ccATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTg < 1:380904/139‑1 (MQ=255) cATCGCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGc > 2:557122/1‑139 (MQ=255) gCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt < 1:308708/139‑1 (MQ=255) gCTTCTGCGGGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGtt < 1:121251/139‑1 (MQ=255) | ACCCGTACCCGCCACGCTTTTACCATTGACGGGCAAATGGGCGTGAACCGCGACGGAACATTGAAAGGTTATAGTCTGGATGTTCTGTCTAACACCGGCGCTTATGCATCTCACGGGCACTCCATCGCTTCTGC‑GGGGG‑GGAATAAAGTCGCTTACCTTTATCCTCGTTGTGCCTACGCTTACAGTTCAAAGACCTGCTATACCAACCTCCCCTCGGCTGGTGCGATGCGTGGTTATGGCGCGCCACAAGTCGTATTTGCCGTT > NC_000913/3001164‑3001427 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |