| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,412,027 | T→C | I403M (ATA→ATG) | intR ← | Rac prophage, integrase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,412,027 | 0 | T | C | 100.0% | 112.0 / NA | 30 | I403M (ATA→ATG) | intR | Rac prophage, integrase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (16/14); total (16/14) | |||||||||||
TCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGC > NC_000913/1411903‑1412162 | tCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGtt < 1:153724/139‑1 (MQ=255) tctttcttTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATcc > 2:85424/1‑139 (MQ=255) ttctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCcaca < 1:151702/139‑1 (MQ=255) tctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGtt < 1:750615/121‑1 (MQ=255) tctttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGtt > 2:750615/1‑121 (MQ=255) ttGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATAcc > 2:651253/1‑139 (MQ=255) gTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCa > 2:606422/1‑118 (MQ=255) gTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCa < 1:606422/118‑1 (MQ=255) attTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCAt < 1:379253/95‑1 (MQ=255) attTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCAt > 2:379253/1‑95 (MQ=255) ctctGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCca > 2:64995/1‑98 (MQ=255) ctctGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCca < 1:64995/98‑1 (MQ=255) tGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCa > 2:527057/1‑139 (MQ=255) tGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCa > 1:715200/1‑139 (MQ=255) cTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTc > 2:337651/1‑126 (MQ=255) cTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCAGCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTc < 1:337651/126‑1 (MQ=255) tAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTtggc < 1:439005/139‑1 (MQ=255) gggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCta > 1:95022/1‑139 (MQ=255) ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAAttt < 1:706571/96‑1 (MQ=255) ggCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAAttt > 2:706571/1‑96 (MQ=255) ggCAAATTGGGGACAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCtat > 1:158560/1‑139 (MQ=255) gCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGTTGGCTATAAATGCCGGGtt < 2:715200/139‑1 (MQ=255) cTTTGCAACTACGATAACCGCGCATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTc < 1:527057/139‑1 (MQ=255) ccGCGCATTCAACAGGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATGTGCGCAGTTTCATGCCCCATTTGGCTCGCTATAAATGCCGGGTTCGCTCCTGCCGTCAAcagccag > 1:476095/1‑139 (MQ=255) cgcATTCAACATGGCCATCTGTTCGTCGTTCATGtcatc < 2:476240/39‑1 (MQ=255) cgcATTCAACATGGACATCTGTTCGTCGTTCATGtcatc > 1:476240/1‑39 (MQ=255) cATTCAACATGGCCATCTGTTCGTCGTTCATGtcatc < 2:510159/37‑1 (MQ=255) cATTCAACATGGCCATCTGTTCGTCGTTCATGtcatc > 1:510159/1‑37 (MQ=255) cATTCAACATGGCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGc > 2:217626/1‑139 (MQ=255) ggCCATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGc < 2:95022/139‑1 (MQ=255) | TCAGGTTGTATTGTTCTTTCTTTGTAATTTGTTGATTTTCTTGCATTATTTCAGTTCTCTGGTACTAAATGGGGCAAATTGGGGGCAAACTTTGCAACTACGATAACCGCGCATTCAACATGGCTATCTGTTCGTCGTTCATGTCATCAATCCACATACCGTAAATTTCATACACCATCTGCGCAGTTTCATGCCCCATTTGGCTGGCTATAAATGCCGGGTTCGCTCCTGCCGTCAACAGCCAGCAGGCAAAAGTATGC > NC_000913/1411903‑1412162 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |