| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,503,221 | A→G | pseudogene (429/432 nt) | insP ← | pseudogene, IS609 transposase A,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,503,221 | 0 | A | G | 100.0% | 115.2 / NA | 31 | pseudogene (429/432 nt) | insP | pseudogene, IS609 transposase A,IS, phage, Tn, Transposon‑related functions, extrachromosomal, transposon related |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (19/12); total (19/12) | |||||||||||
GGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAGTTCCAGACGCGCCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCTG > NC_000913/1503086‑1503332 | ggCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAGTTCCAGACGCGCCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCa > 1:465046/1‑139 (MQ=255) gcCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCAcc > 1:443378/1‑139 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAg > 1:167991/1‑75 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAg < 2:167991/75‑1 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTg > 2:62918/1‑82 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTg < 1:62918/82‑1 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTgg > 1:268715/1‑101 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTgg < 2:268715/101‑1 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGc > 1:35242/1‑139 (MQ=255) cgcTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGc > 2:255329/1‑139 (MQ=255) tttATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAAt > 1:583266/1‑139 (MQ=255) tGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGAc > 2:307175/1‑139 (MQ=255) ccccATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGc > 1:630503/1‑139 (MQ=255) tCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCgg < 1:102223/73‑1 (MQ=255) tCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCgg > 2:102223/1‑73 (MQ=255) tCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAAc < 1:256104/132‑1 (MQ=255) tCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAAc > 2:256104/1‑132 (MQ=255) tCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTg > 1:731834/1‑139 (MQ=255) gggATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCaaa < 2:226701/99‑1 (MQ=255) gggATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCaaa > 1:226701/1‑99 (MQ=255) gggATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCTg > 2:256544/1‑139 (MQ=255) gggATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCTg < 2:465046/139‑1 (MQ=255) gggATATAAGGCGCGGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCTg < 2:731834/139‑1 (MQ=255) cgcgGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGAc < 1:720859/99‑1 (MQ=255) cgcgGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGAc > 2:720859/1‑99 (MQ=255) gcgGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACg > 1:662998/1‑55 (MQ=255) gcgGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACg < 2:662998/55‑1 (MQ=255) cgGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCt < 1:400252/125‑1 (MQ=255) cgGTTTTCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCt > 2:400252/1‑125 (MQ=255) ttttCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCAcc > 1:643055/1‑65 (MQ=255) ttttCCACCTGGCCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCAcc < 2:643055/65‑1 (MQ=255) | GGCGACCGATGCCACCATGTTTGACGTTAACAAAAAGTAGTTCCAGACGCGCCATCGTTAGATGGCGCTTTTTATCCGGTGCGCCGTAAAACCCCATCCTTCAGGGCGGGGATATAAGGCGCGGTTTTCCACCTGACCAGGTGTTTGCTGTTGTTCAATGTATTGGCGGATGACGGATATTGGCGCACCTCCGCAGCTACTGGCAAAATAGCCAGGACTCCACAAAACGCCTTTGTAGTAATACCTG > NC_000913/1503086‑1503332 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |