| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,423,484 | T→A | pseudogene (284/444 nt) C29S (TGC→AGC) |
rzpR → rzoR → |
pseudogene, Rac prophage, Bacteriophage Rz lysis protein family,Phage or Prophage Related, putative Rac prophage endopeptidase, completely contained in another CDS Rac prophage, putative lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,423,484 | 0 | T | A | 100.0% | 71.8 / NA | 26 | pseudogene (284/444 nt) C29S (TGC→AGC) | rzpR rzoR | pseudogene, Rac prophage, Bacteriophage Rz lysis protein family,Phage or Prophage Related, putative Rac prophage endopeptidase, completely contained in another CDS Rac prophage, putative lipoprotein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base A (12/14); total (12/14) | |||||||||||
CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATA > NC_000913/1423369‑1423619 | cTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCg > 2:237167/1‑139 (MQ=17) tCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCgg < 1:672731/139‑1 (MQ=18) gCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTgg < 2:631855/139‑1 (MQ=18) acacGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGc > 1:1082441/1‑139 (MQ=17) ttAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTcccccc > 2:618041/1‑139 (MQ=17) gCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGAc > 2:506560/1‑139 (MQ=18) atgCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGGCTCCGGCGTGGATAATGCAGCCTCCCGCCGACTGGCAGACACCGCTGAACGGGa < 1:677838/139‑1 (MQ=12) gCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCt > 2:557261/1‑85 (MQ=18) gCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCt < 1:557261/85‑1 (MQ=25) tgatgTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTc > 2:224812/1‑139 (MQ=18) tgTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCgg > 2:178165/1‑139 (MQ=25) gTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCggg < 2:122205/139‑1 (MQ=37) ccGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg < 2:1163491/139‑1 (MQ=255) gtcgtcgtcGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg < 1:416113/133‑1 (MQ=255) gtcgtcgtcGGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg > 2:416113/1‑133 (MQ=255) tcgtcgtcgGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGa > 2:225105/1‑88 (MQ=18) tcgtcgtcgGTTGCACATCAAAGCAGTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGa < 1:225105/88‑1 (MQ=18) gTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTg < 2:1082441/139‑1 (MQ=255) gTCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTg < 1:237167/139‑1 (MQ=255) tCTGTCAGTCAGAGCTTGAAGCCACCACCTCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGaa < 1:905916/104‑1 (MQ=255) tCTGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGaa > 2:905916/1‑104 (MQ=255) tGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg > 2:388230/1‑104 (MQ=255) tGTCAGTCAGAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACg < 1:388230/104‑1 (MQ=255) tcagtcagAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTcccccc > 2:473325/1‑56 (MQ=255) tcagtcagAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTcccccc < 1:473325/56‑1 (MQ=255) tcagtcagAGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAg < 1:224812/139‑1 (MQ=255) cagaGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATa < 1:721210/139‑1 (MQ=255) | CTCGATGCAAAATACACGAAGGAGTTAGCTGATGCGAAAGCTGAAAATGATGCTCTGCGTGATGATGTTGCCGCTGGTCGTCGTCGGTTGCACATCAAAGCAGTCTGTCAGTCAGTGCGTGAAGCCACCACCGCCTCCGGCGTGGATAATGCAGCCTCCCCCCGACTGGCAGACACCGCTGAACGGGATTATTTCACCCTCCGGGAACGACTGGTAATGATGCAGGCCCAACTTGAAGGTGCTCAGCAATA > NC_000913/1423369‑1423619 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |