| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,554,430 | (T)7→8 | intergenic (+69/‑146) | uxuB → / → uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,554,423 | 1 | . | T | 100.0% | 107.3 / NA | 32 | intergenic (+62/‑153) | uxuB/uxuR | D‑mannonate oxidoreductase, NAD‑dependent/fructuronate‑inducible hexuronate regulon transcriptional repressor, autorepressor |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base T (16/16); total (16/16) | |||||||||||
GGCGGCATATCAGCAGCTGTGCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCG‑TTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGA > NC_000913/4554304‑4554548 | ggcggcATATCAGCAGCTGTGCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTa < 1:416533/139‑1 (MQ=255) atatCAGCAGCTGTGCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACCTGcc < 1:283586/139‑1 (MQ=255) tatCAGCAGCTGTGCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCa < 2:483316/139‑1 (MQ=255) cagcagCTGTGCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACt > 1:132261/1‑139 (MQ=255) gtgCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGc < 2:165879/139‑1 (MQ=255) gtgCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGc > 2:117974/1‑139 (MQ=255) gCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTa < 1:117974/139‑1 (MQ=255) cgcgGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGt < 1:180622/139‑1 (MQ=255) cgcgGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGt < 2:176442/139‑1 (MQ=255) gTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAg > 2:213637/1‑139 (MQ=255) cgcgAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTCCAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt < 1:302956/121‑1 (MQ=255) cgcgAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt < 1:204927/121‑1 (MQ=255) cgcgAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt > 2:302956/1‑121 (MQ=255) cgcgAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt > 2:204927/1‑121 (MQ=255) tgtgGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACg > 2:470217/1‑139 (MQ=255) tgGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACggg < 2:502872/139‑1 (MQ=255) gTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTaaaa > 1:241073/1‑139 (MQ=255) taactaacTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAAt > 2:22803/1‑139 (MQ=255) tGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGtt > 2:348496/1‑139 (MQ=255) tACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt < 1:110942/88‑1 (MQ=255) tACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt > 2:110942/1‑88 (MQ=255) aCTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGta > 2:18876/1‑88 (MQ=255) aCTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGta < 1:18876/88‑1 (MQ=255) ttACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGc > 1:192498/1‑139 (MQ=255) atcaaACTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCAcgccg > 2:394620/1‑139 (MQ=255) aaCTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGcc > 2:306997/1‑52 (MQ=255) aaCTGATATTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGcc < 1:306997/52‑1 (MQ=255) atatTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACggg > 2:38652/1‑85 (MQ=255) atatTTGGTTGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACggg < 1:38652/85‑1 (MQ=255) tGACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGa < 1:470217/139‑1 (MQ=255) gACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt > 2:250656/1‑47 (MQ=255) gACCAGTTTTCGTTTTTTTTGCCCACCTGTACGTGCCAACTTCCAGt < 1:250656/47‑1 (MQ=255) | GGCGGCATATCAGCAGCTGTGCGAACGCGGTGCGCGCGAGTGTGTGGCTGCGCTGTAACTAACTGATTACCCTACAGACTTACTGGTCAATCAAACTGATATTTGGTTGACCAGTTTTCG‑TTTTTTTGCCCACCTGTACGTGCCAACTTCCAGTGCTAATGGTATAGTTTGAGATTAACGGGGGCCGTAAAATTGCCCGTTGTAGGCCGGATAAGGCGTTCACGCCGCATCCGGCAAAAATTTGA > NC_000913/4554304‑4554548 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |