| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,240,435 | T→C | Q546R (CAG→CGG) | cvrA ← | putative cation/proton antiporter |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,240,435 | 0 | T | C | 100.0% | 117.0 / NA | 31 | Q546R (CAG→CGG) | cvrA | putative cation/proton antiporter |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (15/16); total (15/16) | |||||||||||
AGCATCGCAACCGGCGATAGATGCTTCATTAAATTTAAGATTCAGCTTCCTCTTCAGCCACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCTGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCT > NC_000913/1240301‑1240562 | aGCATCGCAACCGGCGATAGATGCTTCATTAAATTTAAGATTCAGCTTCCTCTTCAGCCACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTc > 2:176749/1‑139 (MQ=255) tCCTCTTCAGCCACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCa > 1:303129/1‑139 (MQ=255) gCCACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTtgct < 2:172115/139‑1 (MQ=255) ccACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGt < 2:513104/81‑1 (MQ=255) ccACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGt > 1:513104/1‑81 (MQ=255) ccACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTtgctg < 1:166524/139‑1 (MQ=255) cGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTAt < 2:303129/139‑1 (MQ=255) cGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTAt > 1:208296/1‑139 (MQ=255) tCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATtc > 2:385930/1‑139 (MQ=255) tCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCAc > 1:483173/1‑100 (MQ=255) tCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCAc < 2:483173/100‑1 (MQ=255) cATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTc < 2:18977/139‑1 (MQ=255) ttATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCa < 1:176749/139‑1 (MQ=255) ttATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCa < 2:20607/139‑1 (MQ=255) aTCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAgg < 2:40929/139‑1 (MQ=255) ttctttctCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCa < 1:385930/139‑1 (MQ=255) tttctCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTtgc > 1:457117/1‑100 (MQ=255) tttctCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTtgc < 2:457117/100‑1 (MQ=255) ctcGGCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTACTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATc > 1:332806/1‑139 (MQ=255) gCCACCGTCCAGATCATCCCGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAgcg < 2:208296/139‑1 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTtgctg < 1:61106/78‑1 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTtgctg > 2:61106/1‑78 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGccc < 1:118735/99‑1 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGccc > 2:118735/1‑99 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTcc < 1:97590/106‑1 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTcc > 2:97590/1‑106 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAgg < 2:110787/109‑1 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAgg > 1:110787/1‑109 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTg > 2:292140/1‑139 (MQ=255) cccGGCAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTg > 1:127151/1‑139 (MQ=255) cAAACTCTACCCGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCt > 2:318486/1‑139 (MQ=255) | AGCATCGCAACCGGCGATAGATGCTTCATTAAATTTAAGATTCAGCTTCCTCTTCAGCCACCCGTACGCCAATCTTCAACACTTCATTATCTTCTTTCTCGGCCACCGTCCAGATCATCCCGGCAAACTCTACCTGGTCACCGACAACCGGTGCCGCGCCTAACAACTGCTGGACAATTTCACCCAGCGTTTGCTGCTTATCACGATATTCTCGCCCGTCTTCCAGGCCATATATCAGCGCAACATCAGCATATTTGGCGCT > NC_000913/1240301‑1240562 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |