| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 199,121 | C→T | V398V (GTC→GTT) | bamA → | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 199,121 | 0 | C | T | 100.0% | 38.1 / NA | 12 | V398V (GTC→GTT) | bamA | BamABCDE complex OM biogenesis outer membrane pore‑forming assembly factor |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (6/6); total (6/6) | |||||||||||
ACGATACCTCGAAAGATGCCGTCCTGCGTCGCGAAATGCGTCAGATGGAAGGTGCATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTCGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAGCGCAACACCGGTAGCTTCAACTTTGGTATTGGTTACGGTAC > NC_000913/198997‑199228 | aCGATACCTCGAAAGATGCCGTCCTGCGTCGCGAAATGCGTCAGATGGAAGGTGCATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCa > 2:260923/1‑139 (MQ=255) gTCAGATGGAAGGTGCATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTa < 1:57529/139‑1 (MQ=255) gTCAGATGGAAGGTGCATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTa < 2:293333/139‑1 (MQ=255) gCATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAgc < 1:31476/139‑1 (MQ=255) cATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAgcg > 1:131284/1‑139 (MQ=255) gggAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGcc < 1:107159/94‑1 (MQ=255) gggAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGcc > 2:107159/1‑94 (MQ=255) gTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAGCGCAACACCGGTAGCTTCAACTTTGGTATTgg > 2:306032/1‑139 (MQ=255) gAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAGCGCAACACCGGTAGCTTCAACTTTGGTATTGGTTACg < 2:331780/139‑1 (MQ=255) gTCTGAATCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAGCGCAACACCGGTAGCTTCAACTTTGGTATTGGATACGGTAc > 1:312300/1‑139 (MQ=255) aaTCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATgtc > 1:447224/1‑75 (MQ=255) aaTCGTCTGGGCTTCTTTGAAACTGTTGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATgtc < 2:447224/75‑1 (MQ=255) | ACGATACCTCGAAAGATGCCGTCCTGCGTCGCGAAATGCGTCAGATGGAAGGTGCATGGCTGGGGAGCGATCTGGTCGATCAGGGTAAGGAGCGTCTGAATCGTCTGGGCTTCTTTGAAACTGTCGATACCGATACCCAACGTGTTCCGGGTAGCCCGGACCAGGTTGATGTCGTCTACAAGGTAAAAGAGCGCAACACCGGTAGCTTCAACTTTGGTATTGGTTACGGTAC > NC_000913/198997‑199228 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |