| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,042,246 | A→G | S655S (AGT→AGC) | etk ← | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,042,246 | 0 | A | G | 100.0% | 81.2 / NA | 24 | S655S (AGT→AGC) | etk | tyrosine‑protein kinase, role in O‑antigen capsule formation |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/13); total (11/13) | |||||||||||
CGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCACTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAGGTGGCACCTGACCGCGAGTAAT > NC_000913/1042119‑1042377 | cgcCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAATCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAg > 2:231841/1‑139 (MQ=255)cgcCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAg > 1:119420/1‑139 (MQ=255) cctgcctgTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGa < 2:434746/139‑1 (MQ=255) cctgTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAAt > 2:64080/1‑139 (MQ=255) tgTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAACCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCa < 1:153389/139‑1 (MQ=255) ttCCAGACTCTGCATTGACAAACTCACATCTTTGGAGGTGATCAAGCCACAACGCGCACCCAGCATGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCAcc < 1:221808/139‑1 (MQ=255) aCTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGcc < 2:119420/139‑1 (MQ=255) cTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGccc < 2:155638/139‑1 (MQ=255) ctctTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCAt < 1:296577/90‑1 (MQ=255) ctctTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCAt > 2:296577/1‑90 (MQ=255) cGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTAt > 1:443909/1‑93 (MQ=255) cGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTAt < 2:443909/93‑1 (MQ=255) aaaaCGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATcg < 1:409400/139‑1 (MQ=255) aaCGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGccc < 2:180168/111‑1 (MQ=255) aaCGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGccc > 1:180168/1‑111 (MQ=255) aaCGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATcgcg > 2:508312/1‑139 (MQ=255) cTGGTGCCAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACg > 2:130984/1‑139 (MQ=255) cAACAGAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAgg < 1:130984/139‑1 (MQ=255) gAACGCCCCACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAGGTGGCa < 1:502491/139‑1 (MQ=255) cccACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCg < 2:196461/45‑1 (MQ=255) cccACGACCGCGGCATCGCTCACCGCCAGCATCGGCGGCGTATCg > 1:196461/1‑45 (MQ=255) cgcgGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTACTTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAGGTGGCACCTGACCGCGAGTa > 1:324731/1‑139 (MQ=255) cgGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAGGTGGCACCTGACCGCGAGTAAt > 2:191191/1‑139 (MQ=255) cgGCATCGCTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAGGTGGCACCTGACCGCGAGTAAt < 2:106778/139‑1 (MQ=255) | CGCCTTTAATATTGACGCCTGCCTGTTCCAGACGCTGCATTGACAAACTCACCTCTTTGGCGGTGTTCAAGCCAAAACGCGCAACCAGCAGGCTGGTGCCAACAGAACGCCCCACGACCGCGGCATCACTCACCGCCAGCATCGGCGGCGTATCGACAATCACCAGATCGTAATGGTCGTTCGCCCATTCCAGTAATTGACGCATCCGATCGCGCATCAGCAGTTCAGACGGGTTAGGTGGCACCTGACCGCGAGTAAT > NC_000913/1042119‑1042377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |