| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,228,728 | C→T | pseudogene (31/150 nt) | mdtQ ← | pseudogene, putative channel/filament proteins |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,228,728 | 0 | C | T | 100.0% | 63.9 / NA | 20 | pseudogene (31/150 nt) | mdtQ | pseudogene, putative channel/filament proteins |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (9/11); total (9/11) | |||||||||||
GCTGTCTGGCCAACCATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGCGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGAC > NC_000913/2228592‑2228857 | gCTGTCTGGCCAACCATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGa > 2:230935/1‑139 (MQ=255) tCTGGCCAACCATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGc < 2:316051/139‑1 (MQ=255) aCCATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATaaa < 1:482875/139‑1 (MQ=255) aGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCAc < 1:374930/139‑1 (MQ=255) cgcCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGCTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGa > 1:326914/1‑139 (MQ=255) gTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCa < 1:168320/139‑1 (MQ=255) tGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCAt > 1:391017/1‑139 (MQ=255) gtCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCa > 2:251554/1‑139 (MQ=255) tCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAg < 1:92798/139‑1 (MQ=255) tgCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGaaa > 2:251015/1‑139 (MQ=255) tGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCg > 2:77669/1‑139 (MQ=255) gcACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGt < 2:391017/139‑1 (MQ=255) acacCCGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTgg < 1:77669/139‑1 (MQ=255) ccGGCCAGCATCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcg < 2:438435/130‑1 (MQ=255) ccGGCCAGCATAAGTAACAGCGGAAAACAGGTAATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTcg > 1:438435/1‑130 (MQ=255) aTCAGTAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTg < 2:141072/139‑1 (MQ=255) tAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTgg < 2:159569/121‑1 (MQ=255) tAACAGCGGAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTgg > 1:159569/1‑121 (MQ=255) ggAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGa > 2:193551/1‑139 (MQ=255) gAAAACAGGTGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGAc < 1:251554/139‑1 (MQ=255) | GCTGTCTGGCCAACCATTTTCAGCGCCGTGGGTAATGCGGTGTCAACTTGTGCAGCGGGCGTTTGCTGGCTTAACGCCTGGCGGGTTTCATGCATAGGCGCACACCCGGCCAGCATCAGTAACAGCGGAAAACAGGCGATGGCTGGATAAAAGGAATCACGATTCATGGGGGAATAATCAGGTAAGAAAAGGTGCGCGGAGATTACCGTGTGTTGCGATATATTTTTTAGTTTCGCGTGGCAATACATCAGTGGCAATAAAACGAC > NC_000913/2228592‑2228857 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |