| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | NC_000913 | 257,908 | Δ776 bp | [crl] | [crl] | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 257908–258675 | 258683 | 9–776 | 42 [0] | [0] 42 | [crl] | [crl] |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 257907 | 0 (0.000) | 34 (0.700) | 29/204 | 0.5 | 100% | intergenic (+8/‑769) | crl/crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers/pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers |
| ? | NC_000913 | 258684 = | 0 (0.000) | pseudogene (9/331 nt) | crl | pseudogene, sigma factor‑binding protein, RNA polymerase holoenzyme formation stimulator,regulator, Surface structures, transcriptional regulator of cryptic csgA gene for curli surface fibers | |||||
ATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG > NC_000913/257774‑258040 | aTTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgc < 1:168996‑M1/139‑6 (MQ=255) tttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgca < 1:914164‑M1/139‑7 (MQ=255) ttGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaa > 2:201039‑M1/1‑132 (MQ=255) gCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaag > 1:100471‑M1/1‑130 (MQ=255) tGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgat < 1:359920‑M1/139‑19 (MQ=255) tttGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttt < 1:201039‑M1/139‑25 (MQ=255) tGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 2:404575‑M1/139‑27 (MQ=255) tGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggct > 1:183248‑M1/1‑101 (MQ=255) cAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc < 2:183248‑M1/139‑59 (MQ=255) tGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggc > 1:1021766‑M1/1‑78 (MQ=255) aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt > 1:336524‑M1/1‑76 (MQ=255) aCGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgt < 2:336524‑M1/116‑41 (MQ=255) ttACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccgg < 2:915374‑M1/139‑67 (MQ=255) aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc > 1:353205‑M1/1‑71 (MQ=255) aCCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaacc < 2:353205‑M1/129‑59 (MQ=255) gAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtg < 2:169070‑M1/139‑72 (MQ=255) tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgt > 2:195213‑M1/1‑65 (MQ=255) tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct < 2:147210‑M1/99‑35 (MQ=255) tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtct > 1:147210‑M1/1‑65 (MQ=255) tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaa > 1:303015‑M1/1‑65 (MQ=255) tGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaa < 2:303015‑M1/72‑8 (MQ=255) ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc > 2:491975‑M1/1‑64 (MQ=255) ggACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttc < 1:491975‑M1/90‑27 (MQ=255) acacCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaa > 2:626379‑M1/1‑62 (MQ=255) acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTAGGGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaat > 1:29789‑M1/1‑61 (MQ=255) acCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtacgtgaatt > 1:716700‑M1/1‑60 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTG‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa < 1:781089‑M1/123‑69 (MQ=255) aaGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaa > 2:781089‑M1/1‑55 (MQ=255) agagCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctgggg < 1:626379‑M1/139‑86 (MQ=255) aaaaaaTTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg > 1:441157‑M1/1‑40 (MQ=255) aaaaaaTTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtg < 2:441157‑M1/115‑76 (MQ=255) aaaaaTTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagct < 2:273697‑M1/139‑101 (MQ=255) aCCGCACTA‑GGCCCGTATATTCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgc < 1:195213‑M1/139‑109 (MQ=255) ttCGTGAAGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttaccta < 1:928112‑M1/139‑128 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 2:133281‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 1:1175811‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 2:236426‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttacctacagtta > 1:386770‑M1/1‑6 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac < 1:131512‑M1/130‑125 (MQ=255) aaGGTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctggtggatggagctggaagcgcaggaatcccgttttac > 2:131512‑M1/1‑6 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg < 1:1131517‑M1/92‑89 (MQ=255) ggTAagtgcaaagataatcgattctttttcgattgtctggctgtatgcgtcaacgtgaaaccggcaccggaagtgcgtgaattctggggctg > 2:1131517‑M1/1‑4 (MQ=255) | ATTTGCTAAATTTTGCCAATTTGGTAAAACAGTTGCATCACAACAGGAGATAGCAATGACGTTACCGAGTGGACACCCGAAGAGCAGATTGATCAAAAAATTTACCGCACTA‑GGCCCGTATATTCGTGAAGGTAGGTAATGACTCCAACTTATTGATAGTGTTTTATGTTCAGATAATGCCCGATGACTTTGTCATGCAGCTCCACCGATTTTGAGAACGACAGCGACTTCCGTCCCAGCCGTGCCAGGTGCTGCCTCAGATTCAGG > NC_000913/257774‑258040 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |