Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,073,225 T→C W563R (TGG→CGG)  flu → CP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,073,2250TC100.0% 1112.3 / NA 284W563R (TGG→CGG) fluCP4‑44 prophage, antigen 43 (Ag43) phase‑variable biofilm formation autotransporter
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (131/153);  total (131/153)

Only 100 of 285 total aligned reads displayed.

ACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGA  >  NC_000913/2073090‑2073360
                                                                                                                                       |                                                                                                                                         
acgctgacgctgAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGa                                                                                                                                        <  1:914915/139‑1 (MQ=255)
 cgctgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGaa                                                                                                                                       >  1:641425/1‑139 (MQ=255)
    tgacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAatat                                                                                                                                    <  1:461925/139‑1 (MQ=255)
     gacgctgaACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATc                                                                                                                                   <  2:866704/139‑1 (MQ=255)
            aaCGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATa                                                                                                                            >  2:581738/1‑139 (MQ=255)
            aaCGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATa                                                                                                                            >  2:1106538/1‑139 (MQ=255)
              cGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAAc                                                                                                                          >  1:931515/1‑139 (MQ=255)
                 cAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGa                                                                                                                                        <  2:493803/122‑1 (MQ=255)
                  aGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCa                                                                                                                      <  1:497552/139‑1 (MQ=255)
                    tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACg                                                                                                                    >  1:879632/1‑139 (MQ=255)
                    tACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACg                                                                                                                    >  1:298924/1‑139 (MQ=255)
                       cGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTg                                                                                                                 <  2:173555/139‑1 (MQ=255)
                        gTCACCACGGATGTCATTGCTCAGCGCGGTACTGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGc                                                                                                                >  1:698609/1‑139 (MQ=255)
                        gTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGa                                                                                                                                        <  1:823623/115‑1 (MQ=255)
                        gTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGa                                                                                                                                        >  2:823623/1‑115 (MQ=255)
                           accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             >  1:297408/1‑139 (MQ=255)
                           accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  2:372413/139‑1 (MQ=255)
                           accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  1:726097/139‑1 (MQ=255)
                           accacGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             >  1:718810/1‑139 (MQ=255)
                              acGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGGTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCg‑‑g                                                                                                        >  1:776826/1‑139 (MQ=255)
                               cGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCg‑‑gt                                                                                                       <  2:972739/139‑1 (MQ=255)
                                ggATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  2:1176367/134‑1 (MQ=255)
                                  aTGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTg                                                                                                                 <  2:657633/128‑1 (MQ=255)
                                  aTGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTg                                                                                                                 >  1:657633/1‑128 (MQ=255)
                                    gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGTCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑Gtggtgg                                                                                                  <  1:833378/139‑1 (MQ=255)
                                    gTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑Gtggtgg                                                                                                  >  2:691292/1‑139 (MQ=255)
                                     tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGTAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGa                                                                                                 <  2:522367/139‑1 (MQ=255)
                                     tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGa                                                                                                 <  1:847788/139‑1 (MQ=255)
                                     tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGa                                                                                                 <  2:811734/139‑1 (MQ=255)
                                     tCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTCTGCTGAACGGTGCCATTAACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCT‑‑GTGGTTGa                                                                                                 <  1:190861/139‑1 (MQ=255)
                                       aTTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGa                                                                                                 >  2:289051/1‑137 (MQ=255)
                                        ttGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  2:298847/126‑1 (MQ=255)
                                            tCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTc                                                                                          >  1:708891/1‑139 (MQ=255)
                                              aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             >  2:78518/1‑120 (MQ=255)
                                              aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAg                                                                                        <  2:65231/139‑1 (MQ=255)
                                              aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAg                                                                                        >  2:1064713/1‑139 (MQ=255)
                                              aGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAg                                                                                        >  1:408148/1‑139 (MQ=255)
                                                cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGcc                                                                                      >  1:483009/1‑139 (MQ=255)
                                                cgcgGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGcc                                                                                      >  2:39178/1‑139 (MQ=255)
                                                     tACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGcc                                                                                 >  1:272260/1‑139 (MQ=255)
                                                      aCAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCg                                                                                <  2:1041232/139‑1 (MQ=255)
                                                       cAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGTCgg                                                                               <  1:251153/139‑1 (MQ=255)
                                                        aGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGa                                                                              <  2:918294/139‑1 (MQ=255)
                                                          cccTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCGGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACa                                                                            >  2:745960/1‑139 (MQ=255)
                                                          cccTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACa                                                                            >  2:541900/1‑139 (MQ=255)
                                                            cTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGa                                                                          <  2:795944/139‑1 (MQ=255)
                                                            cTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGa                                                                          <  2:843044/139‑1 (MQ=255)
                                                             tGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGc                                                                                       <  1:862597/125‑1 (MQ=255)
                                                              gAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGAtt                                                                        <  1:393108/139‑1 (MQ=255)
                                                               aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  2:304779/103‑1 (MQ=255)
                                                               aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAg                                                                                        >  1:797013/1‑122 (MQ=255)
                                                               aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTc                                                                       >  1:898583/1‑139 (MQ=255)
                                                               aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTc                                                                       >  1:132046/1‑139 (MQ=255)
                                                               aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTc                                                                       >  1:307150/1‑139 (MQ=255)
                                                               aaGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTc                                                                       >  2:224514/1‑139 (MQ=255)
                                                                    gACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             >  2:597792/1‑98 (MQ=255)
                                                                    gACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  1:597792/98‑1 (MQ=255)
                                                                       cGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc                                                               <  2:414433/139‑1 (MQ=255)
                                                                       cGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCAcc                                                               <  2:800692/139‑1 (MQ=255)
                                                                         gcagcaCTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCAtt                                                                    <  1:945524/132‑1 (MQ=255)
                                                                            gcaCTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc                                                          <  2:857475/139‑1 (MQ=255)
                                                                            gcaCTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc                                                          <  1:1016739/139‑1 (MQ=255)
                                                                              aCTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAccc                                                        <  2:1092466/139‑1 (MQ=255)
                                                                                tgtgCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCAtt                                                                    >  2:984375/1‑125 (MQ=255)
                                                                                 gtgCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGca                                                     <  1:228492/139‑1 (MQ=255)
                                                                                            tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCa                                                                                                                      <  2:760266/65‑1 (MQ=255)
                                                                                            tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCg‑‑g                                                                                                        >  1:66464/1‑77 (MQ=255)
                                                                                            tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTc                                          >  2:460351/1‑139 (MQ=255)
                                                                                            tGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTc                                          >  1:154584/1‑139 (MQ=255)
                                                                                              ccATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAACCATGTCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGt                                        >  1:76476/1‑139 (MQ=255)
                                                                                                 ttGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTAcc                                     >  2:938370/1‑139 (MQ=255)
                                                                                                    aCCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGc                                  <  1:1106538/139‑1 (MQ=255)
                                                                                                    aCCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGc                                  <  1:1058187/139‑1 (MQ=255)
                                                                                                    aCCCCACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGc                                  <  1:978805/139‑1 (MQ=255)
                                                                                                      cccACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAggg                                                >  2:320651/1‑123 (MQ=255)
                                                                                                        cACGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCAttt                                                                   >  1:1092909/1‑102 (MQ=255)
                                                                                                         aCGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc                                                          >  1:512534/1‑110 (MQ=255)
                                                                                                          cGAATGTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCGGTGTGGTGGATGACCTCAGCCATGc                                                                                  >  1:611783/1‑87 (MQ=255)
                                                                                                               gTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGAc                                                                             <  1:1156700/85‑1 (MQ=255)
                                                                                                               gTCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGAc                                                                             >  2:1156700/1‑85 (MQ=255)
                                                                                                                tCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACg                                                                                                                    <  2:532508/47‑1 (MQ=255)
                                                                                                                tCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACg                                                                                                                    >  1:532508/1‑47 (MQ=255)
                                                                                                                tCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAccc                                                        >  2:255408/1‑105 (MQ=255)
                                                                                                                tCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGt                      >  2:906004/1‑139 (MQ=255)
                                                                                                                tCACTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGt                      >  1:988794/1‑139 (MQ=255)
                                                                                                                  aCTCTCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGAtt                                                                        <  1:804710/87‑1 (MQ=255)
                                                                                                                   ctctCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCg‑‑gt                                                                                                       >  2:669273/1‑55 (MQ=255)
                                                                                                                   ctctCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGa                                                                                                 >  2:70062/1‑61 (MQ=255)
                                                                                                                   ctctCGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGa                                                                          <  2:875298/84‑1 (MQ=255)
                                                                                                                    tctcGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGaaa                  <  2:717292/139‑1 (MQ=255)
                                                                                                                       cGCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCAc                                                          <  1:1176296/96‑1 (MQ=255)
                                                                                                                        gCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             <  2:379057/46‑1 (MQ=255)
                                                                                                                        gCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             >  1:379057/1‑46 (MQ=255)
                                                                                                                        gCCTCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGc                                  >  1:1039778/1‑119 (MQ=255)
                                                                                                                         ccTACGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGt                                                                                                             >  1:757232/1‑45 (MQ=38)
                                                                                                                           tCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCAttt                                                                   <  2:426175/83‑1 (MQ=255)
                                                                                                                           tCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCAttt                                                                   >  1:426175/1‑83 (MQ=255)
                                                                                                                           tCCGGTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGa           <  1:581738/139‑1 (MQ=255)
                                                                                                                              ggTGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGc                                                                                       <  2:623041/60‑1 (MQ=255)
                                                                                                                                tGCCACCCGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGa      >  2:282115/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                                         
ACGCTGACGCTGAACGACAGTACCGTCACCACGGATGTCATTGCTCAGCGCGGTACAGCCCTGAAGCTGACCGGCAGCACTGTGCTGAACGGTGCCATTGACCCCACGAATGTCACTCTCGCCTCCGGTGCCACCTGGAATATCCCCGATAACGCCACGGTGCAGTCG‑‑GTGGTGGATGACCTCAGCCATGCCGGACAGATTCATTTCACCTCCACCCGCACAGGGAAGTTCGTACCGGCAACCCTGAAAGTGAAAAACCTGAACGGACAGA  >  NC_000913/2073090‑2073360

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: