| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,772,200 | G→A | pseudogene (867/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,772,200 | 0 | G | A | 100.0% | 208.2 / NA | 60 | pseudogene (867/900 nt) | yfjV | pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/24); total (36/24) | |||||||||||
TGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGT > NC_000913/2772065‑2772331 | tGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGcc > 1:354349/1‑139 (MQ=255) tCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCag > 2:153291/1‑139 (MQ=255) gTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACa > 1:255517/1‑139 (MQ=255) aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:372376/139‑1 (MQ=255) aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 1:82765/139‑1 (MQ=255) aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:355640/139‑1 (MQ=255) aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:692191/139‑1 (MQ=255) aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 1:1038923/139‑1 (MQ=255) tGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca < 2:488788/139‑1 (MQ=255) tGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca < 1:687664/139‑1 (MQ=255) gAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGcac < 1:271915/139‑1 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:125066/1‑139 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:1006056/1‑139 (MQ=255) tcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGa > 2:364650/1‑139 (MQ=255) gtgtTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGc > 2:749982/1‑139 (MQ=255) ttGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCgg < 1:749982/139‑1 (MQ=255) cGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTAc < 2:296860/139‑1 (MQ=255) tGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACgg > 1:502390/1‑139 (MQ=255) tGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACgg > 2:1064206/1‑139 (MQ=255) tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTa < 1:1064206/139‑1 (MQ=255) ccACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAat < 1:639808/139‑1 (MQ=255) aTGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCatat > 2:272000/1‑139 (MQ=255) gTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATAtttt > 2:60256/1‑139 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGcac > 2:956015/1‑85 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGcac < 1:956015/85‑1 (MQ=255) tAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATAttttt > 2:624224/1‑139 (MQ=255) ttGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTggg < 2:1006056/139‑1 (MQ=255) gCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCa > 1:333865/1‑139 (MQ=255) gCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCa > 2:1027690/1‑139 (MQ=255) cTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCACGTGATTGTCATATTTTTCAGGGCaa > 2:471655/1‑139 (MQ=255) tCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAg < 2:396025/139‑1 (MQ=255) atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGcaca > 2:1052845/1‑139 (MQ=255) atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGcaca > 2:390947/1‑139 (MQ=255) tATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAg > 1:880545/1‑130 (MQ=255) tATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAg < 2:880545/130‑1 (MQ=255) tCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGcc > 2:724600/1‑139 (MQ=255) aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATcccc < 2:572582/97‑1 (MQ=255) aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATcccc > 1:572582/1‑97 (MQ=255) aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCcaca > 1:190766/1‑139 (MQ=255) aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCcaca > 2:578315/1‑139 (MQ=255) tACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCAcagca > 1:897880/1‑139 (MQ=255) aCAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCAcagcag < 2:125066/139‑1 (MQ=255) aCAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCAcagcag < 1:724600/139‑1 (MQ=255) cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca > 1:687206/1‑56 (MQ=255) cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca < 2:687206/56‑1 (MQ=255) cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCaga > 1:430164/1‑139 (MQ=255) cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCaga > 2:75725/1‑139 (MQ=255) aGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTa > 1:158328/1‑73 (MQ=255) aGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTa < 2:158328/73‑1 (MQ=255) aGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGtt > 1:930577/1‑139 (MQ=255) gACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca < 1:515256/50‑1 (MQ=255) gACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca > 2:515256/1‑50 (MQ=255) agagagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGa < 1:495389/139‑1 (MQ=255) ccgccACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAata < 1:1106970/72‑1 (MQ=255) ccgccACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAata > 2:1106970/1‑72 (MQ=255) ccgccACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCa > 1:503162/1‑139 (MQ=255) ccgccACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCa > 2:840578/1‑139 (MQ=255) ccacgccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGCTTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATc > 1:349799/1‑139 (MQ=255) cacgccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCg > 1:36807/1‑139 (MQ=255) ccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGt > 1:878980/1‑139 (MQ=255) | TGTCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGT > NC_000913/2772065‑2772331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |