| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,807,360 | G→A | G77S (GGC→AGC) | proX → | glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,807,360 | 0 | G | A | 100.0% | 258.8 / NA | 72 | G77S (GGC→AGC) | proX | glycine betaine/proline ABC transporter periplasmic binding protein, cold shock protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (36/36); total (36/36) | |||||||||||
TCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATA > NC_000913/2807227‑2807492 | tCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGAt < 2:293/139‑1 (MQ=255) aGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCa < 1:105865/139‑1 (MQ=255) gTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCaa > 2:134683/1‑139 (MQ=255) ccATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCAccgc > 1:4633/1‑139 (MQ=255) tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGt > 1:594992/1‑139 (MQ=255) tCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGt > 2:570214/1‑139 (MQ=255) gaaACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGa < 1:244911/139‑1 (MQ=255) aCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCt < 2:47500/118‑1 (MQ=255) aCCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCt > 1:47500/1‑118 (MQ=255) cTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCa < 1:305100/139‑1 (MQ=255) ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTg > 1:775740/1‑139 (MQ=255) ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTg > 2:712918/1‑139 (MQ=255) ccAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTg < 1:668999/139‑1 (MQ=255) ctgctgGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca < 1:468994/139‑1 (MQ=255) tCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTa < 2:645929/139‑1 (MQ=255) tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGaa > 1:201612/1‑139 (MQ=255) tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGaa > 1:387671/1‑139 (MQ=255) tCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGCTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGaa > 1:733858/1‑139 (MQ=255) tGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGaa > 1:632785/1‑105 (MQ=255) tGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGaa < 2:632785/105‑1 (MQ=255) cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCa < 1:785673/113‑1 (MQ=255) cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCa > 2:785673/1‑113 (MQ=255) cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGac > 2:79202/1‑122 (MQ=255) cgcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGac < 1:79202/122‑1 (MQ=255) gcTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGcc > 1:303258/1‑139 (MQ=255) aTTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGAt < 1:756087/139‑1 (MQ=255) ttAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATa < 2:303258/139‑1 (MQ=255) tAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCAt > 2:255848/1‑107 (MQ=255) tAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCAt < 1:255848/107‑1 (MQ=255) aCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAAc < 2:515362/68‑1 (MQ=255) aCCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAAc > 1:515362/1‑68 (MQ=255) tCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAg > 1:844624/1‑111 (MQ=255) tCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAg < 2:844624/111‑1 (MQ=255) tCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCg > 1:465035/1‑139 (MQ=255) caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCAc < 2:419412/89‑1 (MQ=255) caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCAc > 1:419412/1‑89 (MQ=255) caacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGt < 1:12601/139‑1 (MQ=255) aacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGacaac < 1:609122/99‑1 (MQ=255) aacaaACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGacaac > 2:609122/1‑99 (MQ=255) cAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTa > 1:1102262/1‑139 (MQ=255) gCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTAtt > 1:102629/1‑139 (MQ=255) tACAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg < 1:145455/139‑1 (MQ=255) aCAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTg < 2:632458/53‑1 (MQ=255) aCAACGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTg > 1:632458/1‑53 (MQ=255) aaCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg > 2:844147/1‑136 (MQ=255) aaCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGgcg < 1:844147/136‑1 (MQ=255) aCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 2:201612/139‑1 (MQ=255) aCGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 1:570214/139‑1 (MQ=255) aCGTTGGCTACACCTCACTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 1:230306/139‑1 (MQ=255) cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCg < 1:609566/89‑1 (MQ=255) cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCg > 2:609566/1‑89 (MQ=255) cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca < 2:102629/139‑1 (MQ=255) cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca < 2:62683/139‑1 (MQ=255) cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca < 2:733858/139‑1 (MQ=255) cGTTGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca < 1:134683/139‑1 (MQ=255) cGTTGGCTACACCTCGCTGGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca > 1:617395/1‑139 (MQ=255) ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca > 2:166899/1‑139 (MQ=255) ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGcaca > 1:112502/1‑139 (MQ=255) ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca < 2:80333/137‑1 (MQ=255) ttGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGca > 1:80333/1‑137 (MQ=255) tGGCTACACCTCGCTTGCTTCCAGGGATGCAACCTTCACCGCCGTGAACTGTACGCCACTGCATGACAACATGTACCAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAg > 2:679872/1‑139 (MQ=255) tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca > 1:547737/1‑68 (MQ=255) tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca < 2:547737/68‑1 (MQ=255) tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc > 2:966035/1‑135 (MQ=255) tGGCTACACCTCGCTTGCTTCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGc < 1:966035/135‑1 (MQ=255) gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca > 1:1077383/1‑56 (MQ=255) gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGaca < 2:1077383/56‑1 (MQ=255) gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAgggg < 2:640875/104‑1 (MQ=255) gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAgggg > 1:640875/1‑104 (MQ=255) gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAg > 2:1021129/1‑101 (MQ=255) gcttgcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAg < 1:1021129/101‑1 (MQ=255) gcttCCAGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATa > 1:294193/1‑139 (MQ=255) | TCCAGTTCAGAGCACCATCACTGAAGAAACCTTCCAGACGCTGCTGGTCAGTCGTGCGCTGGAGAAATTAGGTTATACCGTCAACAAACCCAGCGAAGTAGATTACAACGTTGGCTACACCTCGCTTGCTTCCGGCGATGCAACCTTCACCGCCGTGAACTGGACGCCACTGCATGACAACATGTACGAAGCTGCCGGTGGCGATAAGAAATTTTATCGTGAAGGGGTATTTGTTAACGGCGCGGCACAGGGTTACCTGATCGATA > NC_000913/2807227‑2807492 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |