New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NC_000913	1722616 =	49 (0.820)	3 (0.060)	3/202	5.6	6.5%	coding (496/2013 nt)	ydhK	putative efflux protein (PET) component of YdhJK efflux pump
	?	NC_000913	= 1722612	42 (0.780)					coding (492/2013 nt)	ydhK	putative efflux protein (PET) component of YdhJK efflux pump
Rejected: Coverage evenness skew score above cutoff.
Rejected: Frequency below/above cutoff threshold.

TGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAG  >  NC_000913/1722480‑1722745                                                                                                                                         |                                                                                                                                  tGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatg                                                                                                                                 >  2:710211/1‑139 (MQ=255)      ttCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatga                                                                                                                                   >  2:661254/1‑132 (MQ=255)      ttCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatga                                                                                                                                   <  1:661254/132‑1 (MQ=255)       tCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgatgatg                                                                                                                           >  2:984075/1‑139 (MQ=255)          aCTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATc                                                                                                                        <  1:411260/139‑1 (MQ=255)           cTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATcc                                                                                                                       >  1:217711/1‑139 (MQ=255)                                  catcGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACt                                                                                                <  2:782011/139‑1 (MQ=255)                                    tcGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGc                                                                                              <  2:217711/139‑1 (MQ=255)                                           tCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGC‑‑‑ATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAAcc                                                                                    >  1:1058736/1‑139 (MQ=255)                                            ccGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTaa                                                                                      <  1:710211/139‑1 (MQ=255)                                              gATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAAcc                                                                                    <  1:984075/139‑1 (MQ=255)                                                tGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGc                                                                                  >  2:74394/1‑139 (MQ=255)                                                tGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGc                                                                                  <  1:74394/139‑1 (MQ=255)                                                          tACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGC‑‑‑ATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATg                                                                     <  2:152283/139‑1 (MQ=255)                                                            cTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACAt                                                                      >  1:1209204/1‑139 (MQ=255)                                                               aGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCa                                                                   <  1:117348/139‑1 (MQ=255)                                                                 gccagccaGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACt                                                                                                <  1:495985/108‑1 (MQ=255)                                                                 gccagccaGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACt                                                                                                >  2:495985/1‑108 (MQ=255)                                                                               ggATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATg                                                                     <  2:779430/121‑1 (MQ=255)                                                                               ggATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATg                                                                     >  1:779430/1‑121 (MQ=255)                                                                               ggATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGaa                                                   <  2:934323/139‑1 (MQ=255)                                                                               ggATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGaa                                                   >  2:1141136/1‑139 (MQ=255)                                                                                    tCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCa                                                                   <  1:124061/118‑1 (MQ=255)                                                                                    tCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCa                                                                   >  2:124061/1‑118 (MQ=255)                                                                                       cTCAGGCGCGCTTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgat                                                                                                                               <  1:210539/55‑1 (MQ=255)                                                                                       cTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatgatgat                                                                                                                               >  2:210539/1‑55 (MQ=255)                                                                                       cTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatga                                                                                                                                   >  1:1314554/1‑51 (MQ=255)                                                                                       cTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCatga                                                                                                                                   <  2:1314554/51‑1 (MQ=255)                                                                                               cgcgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATc                                                                                                                        >  2:954024/1‑54 (MQ=255)                                                                                               cgcgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATc                                                                                                                        <  1:954024/54‑1 (MQ=255)                                                                                               cgcgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAg                                                                                                                <  2:170038/62‑1 (MQ=255)                                                                                               cgcgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAg                                                                                                                >  1:170038/1‑62 (MQ=255)                                                                                               cgcgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTActct                                   >  2:1187051/1‑139 (MQ=255)                                                                                               cgcgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTActct                                   >  1:683548/1‑139 (MQ=255)                                                                                                 cgTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTgg                                 <  1:1187051/139‑1 (MQ=255)                                                                                                      gCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGcc                            <  1:835710/139‑1 (MQ=255)                                                                                                                aGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAAcc                  <  2:940098/139‑1 (MQ=255)                                                                                                                    ggTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTa                                                                                                  >  2:454608/1‑55 (MQ=255)                                                                                                                    ggTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTa                                                                                                  <  1:454608/55‑1 (MQ=255)                                                                                                                     gTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGc             >  2:1287178/1‑139 (MQ=255)                                                                                                                     gTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGc             >  1:433492/1‑139 (MQ=255)                                                                                                                           tgtgCGGCGGC‑‑‑ATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTgc    <  2:1058736/139‑1 (MQ=255)                                                                                                                            gtgCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAAcag                                                                                   <  1:397426/62‑3 (MQ=255)                                                                                                                            gtgCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAAcag                                                                                   >  2:397426/1‑60 (MQ=255)                                                                                                                             tgCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTg     <  1:1287178/139‑1 (MQ=255)                                                                                                                             tgCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTg     <  1:652532/139‑1 (MQ=255)                                                                                                                             tgCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTg     >  2:985699/1‑139 (MQ=255)                                                                                                                              gcggcgGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTgc    <  2:683548/139‑1 (MQ=255)                                                                                                                               cggcggCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTgca   >  1:980250/1‑139 (MQ=255)                                                                                                                                ggcggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTgcag  >  1:1317965/1‑139 (MQ=255)                                                                                                                                  cggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGccc                                                              <  2:733334/77‑1 (MQ=255)                                                                                                                                  cggcATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGccc                                                              >  1:733334/1‑77 (MQ=255)                                                                                                                                         |                                                                                                                                  TGCATTTCAACTGGCGGGCTACACGGCTGCCATCATCGCCTTTCCGATGGTTAATATTACTGAGGCCAGCCAGCTGTGGGATATCGCTCAGGCGCGCGTTTGCGAGGTAATAGTCGGTATTTTGTGCGGCGGCATGATGATGATGATCCTGCCGAGCAGTTCCGATGCTACTGCCCTTTTAACCGCATTGAAAAACATGCACGCCCGATTACTGGAACATGCCAGTTTACTCTGGCAGCCTGAAACAACCGATGCCATTCGTGCAG  >  NC_000913/1722480‑1722745

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.