| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,772,200 | G→A | pseudogene (867/900 nt) | yfjV ← | pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,772,200 | 0 | G | A | 100.0% | 153.9 / NA | 44 | pseudogene (867/900 nt) | yfjV | pseudogene, CP4‑57 prophage,Phage or Prophage Related, putative pump protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (24/20); total (24/20) | |||||||||||
TCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGT > NC_000913/2772067‑2772331 | tCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGc > 1:1285926/1‑136 (MQ=255) ggTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCagag < 1:1033101/139‑1 (MQ=255) ttCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg < 2:867008/139‑1 (MQ=255) ttCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg > 1:124249/1‑139 (MQ=255) ttGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACaa > 1:947219/1‑139 (MQ=255) tgttATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCAc < 2:233775/139‑1 (MQ=255) gttATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCAcc > 1:635627/1‑139 (MQ=255) aTGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:124249/139‑1 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc < 2:222859/131‑1 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGc > 1:222859/1‑131 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:261902/1‑139 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:371193/1‑139 (MQ=255) tctcCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCAt > 1:655900/1‑139 (MQ=255) gtgtTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGc < 1:508215/139‑1 (MQ=255) tGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACgg > 2:208014/1‑139 (MQ=255) gAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGa < 2:947219/139‑1 (MQ=255) tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg > 1:653720/1‑95 (MQ=255) tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg < 2:653720/95‑1 (MQ=255) tGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTa < 2:261902/139‑1 (MQ=255) ccACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAat < 1:208014/139‑1 (MQ=255) cGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGGGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGAACAGGCATGACAATGCCGGTACGGAAGTAAGATCCCCaa > 1:79371/1‑139 (MQ=21) cTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCaa > 2:710012/1‑139 (MQ=255) cTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCaa > 1:756288/1‑139 (MQ=255) cATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGc > 1:946461/1‑139 (MQ=255) atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTa > 1:931098/1‑91 (MQ=255) atCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTa < 2:931098/91‑1 (MQ=255) tCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTggg > 2:955115/1‑130 (MQ=255) tCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTggg < 1:955115/130‑1 (MQ=255) aTCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGc < 2:371193/139‑1 (MQ=255) aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTg < 2:88625/106‑1 (MQ=255) aaTTACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTg > 1:88625/1‑106 (MQ=255) tACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg < 2:346563/42‑1 (MQ=255) tACAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTg > 1:346563/1‑42 (MQ=255) cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAatat < 1:210540/88‑1 (MQ=255) cAAAGTGACAGAGAGCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAatat > 2:210540/1‑88 (MQ=255) agagagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGa < 1:1068376/139‑1 (MQ=255) agagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca > 1:349905/1‑45 (MQ=255) agagCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGca < 2:349905/45‑1 (MQ=255) agCCGCCACGCCAGCGCAGCCAGAGTGACAATCAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTc < 1:769504/99‑1 (MQ=255) agCCGCCACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTc > 2:769504/1‑99 (MQ=255) ccgccACGCCAGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCa > 2:355061/1‑139 (MQ=255) gccacgccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAAt < 2:635627/139‑1 (MQ=255) cacgccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCg > 1:1006970/1‑139 (MQ=255) ccaGCGCAGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGt > 2:537563/1‑139 (MQ=255) | TCGGTTCGTTGCCGTTGTTATGAAGCATCTCCAGCGTGTTGCGTGAGGTGCCACAGGCCGGGTTGTGATAGATGGTAATGTTGCTCATATCAGTATCTAATTACAAAGTGACAGAGAGCCGCCACGCCAGCGCGGCCAGAGTGACAAACAGCACCGGCACAGTCATGACAATGCCGGTACGGAAGTAATATCCCCAAGTGATTGTCATATTTTTCTGGGCAAGCACATGCAGCCACAGCAGAGTTGCCAGACTGCCAATCGGGGT > NC_000913/2772067‑2772331 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |