| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 986,267 | C→T | G239D (GGT→GAT) | ompF ← | outer membrane porin 1a (Ia,b,F) |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 986,267 | 0 | C | T | 100.0% | 58.6 / NA | 18 | G239D (GGT→GAT) | ompF | outer membrane porin 1a (Ia,b,F) |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/8); total (10/8) | |||||||||||
CAACTAACAGAACGTCTTGCGTTTTGTTGGCGAAGCCGCTGGTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGACCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGCCTTCGTATTCG > NC_000913/986136‑986377 | cAACTAACAGAACGTCTTGCGTTTTGTTGGCGAAGCCGCTGGTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGc > 2:535381/1‑139 (MQ=255) tCTTGCGTTTTGTTGGCGAAGCCGCTGGTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGAGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCtt > 1:137960/1‑139 (MQ=255) tgttgGCGAAGCCGCTGGTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGtt > 1:395873/1‑139 (MQ=255) tgGCGAAGCCGCTGGTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGcc < 2:140002/139‑1 (MQ=255) ggTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGct < 1:619535/139‑1 (MQ=255) aaaTTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCACTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAgg < 2:111353/139‑1 (MQ=255) aaTTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGt < 2:290703/139‑1 (MQ=255) aTCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAg > 2:70091/1‑139 (MQ=255) gCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGc > 1:412386/1‑139 (MQ=255) gTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTAcc < 1:576699/69‑1 (MQ=255) gTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTAcc > 2:576699/1‑69 (MQ=255) ttCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGc > 2:531895/1‑139 (MQ=255) cGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGCCt > 1:115623/1‑139 (MQ=255) cGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGCCt > 2:90930/1‑139 (MQ=255) gTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGCCttcgtattcg < 1:531895/139‑1 (MQ=255) gTAGATGTTGTTCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGCCttcgtattcg < 2:395873/139‑1 (MQ=255) gttgttCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGc > 1:522531/1‑96 (MQ=255) gttgttCGCGTCGTACTTCAGATCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGc < 2:522531/96‑1 (MQ=255) | CAACTAACAGAACGTCTTGCGTTTTGTTGGCGAAGCCGCTGGTGTTTGTAAATTTATTAGTGATCGGCGTAGCGTTACGGGTTTCACCGTAGTTCGCTGCCAGGTAGATGTTGTTCGCGTCGTACTTCAGACCAGTAGCCCACTGTTCAGCTTTTTTACCGTTGCCAAGAGGTTGAGCTTCTTGCAGGTTGGTACGGTCAGCTGCACCATAAGCACCAACGATACCAAAGCCTTCGTATTCG > NC_000913/986136‑986377 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |