| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,189,993 | A→G | E38G (GAG→GGG) | yqiH → | putative periplasmic pilin chaperone |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,189,993 | 0 | A | G | 100.0% | 103.2 / NA | 28 | E38G (GAG→GGG) | yqiH | putative periplasmic pilin chaperone |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (15/13); total (15/13) | |||||||||||
AAAATTAATTCAGGATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGAGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAA > NC_000913/3189858‑3190118 | aaaaTTAATTCAGGATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTc > 1:611304/1‑139 (MQ=255) tAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa < 2:611304/139‑1 (MQ=255) cagcagGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCt > 1:265750/1‑139 (MQ=255) agGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc < 2:502886/139‑1 (MQ=255) agGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc < 1:66952/139‑1 (MQ=255) ctctCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGa < 2:340032/139‑1 (MQ=255) tcCTGTATGAGTAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATag > 1:621630/1‑139 (MQ=255) tcCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATag > 2:284193/1‑139 (MQ=255) tcCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATag < 2:265750/139‑1 (MQ=255) gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa > 1:332962/1‑91 (MQ=255) gcagcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa < 2:332962/91‑1 (MQ=255) agcaTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAg > 1:523090/1‑139 (MQ=255) caTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGc > 2:277679/1‑139 (MQ=255) aTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaaa < 1:108209/95‑1 (MQ=255) aTTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTaaaaa > 2:108209/1‑95 (MQ=255) catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCaaa < 2:435252/101‑1 (MQ=255) catcatCCCGGATCGTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATAAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCaaa > 1:435252/1‑101 (MQ=255) gTACCCGTATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGt < 1:284193/139‑1 (MQ=255) tATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc < 1:527374/76‑1 (MQ=255) tATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGcc > 2:527374/1‑76 (MQ=255) tATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCa > 1:604655/1‑139 (MQ=255) tATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCa > 2:54665/1‑139 (MQ=255) tATCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCa < 2:549864/139‑1 (MQ=255) aTCATAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCaa > 2:535832/1‑139 (MQ=255) aTAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAGAAACCTGCCCTATCTGGCCCAAACa < 2:479595/78‑1 (MQ=255) aTAATGAATGGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTTGCCCAAACa > 1:479595/1‑78 (MQ=255) aatgaatgGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa < 1:564919/45‑1 (MQ=255) aatgaatgGGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCa > 2:564919/1‑45 (MQ=255) | AAAATTAATTCAGGATGAAACTAATGCGCTACTTAAATACAAAGAATATCATTGCAGCAGGAGTATTACTCTCCTGTATGAGCAGCATTGCCTGGGGTGCCATCATCCCGGATCGTACCCGTATCATAATGAATGAGTCAGATAAAGGCGAAGCATTAAAACTTACTAATCAAAGTAAAAACCTGCCCTATCTGGCCCAAACATGGATAGAAGATACGAAAGGCAATAAATCGCGTGACTTTATTGTCACTGTTCCTCCAA > NC_000913/3189858‑3190118 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |