| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 3,901,992 | C→T | A77T (GCC→ACC) | bglH ← | carbohydrate‑specific outer membrane porin, cryptic |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 3,901,992 | 0 | C | T | 100.0% | 80.6 / NA | 24 | A77T (GCC→ACC) | bglH | carbohydrate‑specific outer membrane porin, cryptic |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (13/11); total (13/11) | |||||||||||
ATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTTCTCTTAAC > NC_000913/3901858‑3902101 | aTCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTGCTGGTCGGGAACGGATTGGTGGCa < 1:370057/139‑1 (MQ=255)aTCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCa < 2:533297/139‑1 (MQ=255) caAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTg < 2:429632/139‑1 (MQ=255) aaTCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACt < 2:97079/139‑1 (MQ=255) tCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTa < 1:567252/139‑1 (MQ=255) tCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCt > 1:348925/1‑139 (MQ=255) tCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGAtt > 2:40799/1‑139 (MQ=255) aTAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCt > 2:311765/1‑139 (MQ=255) aTCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCg < 2:205501/139‑1 (MQ=255) ctcACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTttc < 2:348925/139‑1 (MQ=255) aCCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGtt > 1:341388/1‑139 (MQ=255) tACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCtt > 1:79829/1‑139 (MQ=255) cATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGt > 1:578047/1‑139 (MQ=255) tCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGttt < 2:612855/139‑1 (MQ=255) ggTTTTGCGGCACTACTGGTCGGGAACGGATTggtggc < 1:20741/38‑1 (MQ=255) ggTTTTGCGGCACTACTGGTCGGGAACGGATTggtggc > 2:20741/1‑38 (MQ=255) ggTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTtctc > 1:263101/1‑139 (MQ=255) ggTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTtctc > 1:430047/1‑139 (MQ=255) ggTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTtctc > 1:551367/1‑139 (MQ=255) ggTTTTGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTtctc > 2:558095/1‑139 (MQ=255) tGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTTCTCTTAAc < 2:341388/139‑1 (MQ=255) tGCGGCACTACTGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTTCTCTTAAc > 1:396074/1‑139 (MQ=255) ctGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCg < 2:523180/40‑1 (MQ=255) ctGGTCGGGAACGGATTGGTGGCATACCCTTGATCATTCg > 1:523180/1‑40 (MQ=255) gATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCg > 1:31596/1‑51 (MQ=255) gATTGGTGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCg < 2:31596/51‑1 (MQ=255) | ATCTTTCACAAATTTACTGAAATCTTTCAGAGTCATGGAAGAATAAATCGAGCCTGTCTCACTGGCATTTTTCTCTTCATTTTTGACCAGTACAGCATCAGGTTTTGCGGCACTACTGGTCGGGAACGGATTGGCGGCATACCCTTGATCATTCGTACTTACGCTACGATTCACCGTCGCTGGCGTATACTTTTTCTTCTCTTCATCTTTATACTTTTTGAGTTCGCTTTGCGTTTCTCTTAAC > NC_000913/3901858‑3902101 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |