Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 2,482,862 A→G L160L (TTA→CTA)  emrK ← multidrug resistance efflux pump membrane fusion protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,482,8620AG100.0% 387.7 / NA 100L160L (TTA→CTA) emrKmultidrug resistance efflux pump membrane fusion protein
Reads supporting (aligned to +/- strand):  ref base A (0/0);  new base G (48/52);  total (48/52)

GCCAACCAGGCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAACGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTAT  >  NC_000913/2482726‑2482996
                                                                                                                                        |                                                                                                                                      
gcCAACCAGGCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCg                                                                                                                                      <  1:811975/139‑1 (MQ=255)
gcCAACCAGGCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCg                                                                                                                                      <  1:1036448/139‑1 (MQ=255)
gcCAACCAGGCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCg                                                                                                                                      <  1:1052838/139‑1 (MQ=255)
      cAGGCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCtt                                                                                                                                <  1:838978/139‑1 (MQ=255)
        ggCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTg                                                                                                                              <  2:651028/139‑1 (MQ=255)
         gCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTgg                                                                                                                             >  2:1264393/1‑139 (MQ=255)
                   ttGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCg                                                                                                                                      >  2:684531/1‑120 (MQ=255)
                      cATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGt                                                                                                                <  1:539125/139‑1 (MQ=255)
                        tCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCt                                                                                                                       >  2:1443120/1‑130 (MQ=255)
                        tCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCt                                                                                                                       <  1:1443120/130‑1 (MQ=255)
                        tCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGttt                                                                                                              >  2:1347271/1‑139 (MQ=255)
                            ccgcTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCttt                                                                                                          <  2:380658/139‑1 (MQ=255)
                            ccgcTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGACGCTTTGCTACTTATTAGCGTATCTTTGGt                                                                                                                            >  2:1459288/1‑121 (MQ=255)
                            ccgcTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGACGCTTTGCTACTTATTAGCGTATCTTTGGt                                                                                                                            <  1:1459288/121‑1 (MQ=255)
                                 tCAACGACTTGTGGCTGACGGCTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGCTTGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGaaa                                                                                                     <  2:879647/139‑1 (MQ=255)
                                           gtgGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCTGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTg                                                                                           <  2:434792/139‑1 (MQ=255)
                                                  aCGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCt                                                                                    >  2:1074711/1‑139 (MQ=255)
                                                       ttAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACgg                                                                               <  1:1264393/139‑1 (MQ=255)
                                                            ggTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTc                                                                          <  1:1074711/139‑1 (MQ=255)
                                                              tgtgtTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        <  1:395695/139‑1 (MQ=255)
                                                                tgtTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACg                                                                      >  2:256115/1‑139 (MQ=255)
                                                                 gtTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAAccccc                                                                                             >  1:793666/1‑115 (MQ=255)
                                                                 gtTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAAccccc                                                                                             <  2:793666/115‑1 (MQ=255)
                                                                      ttACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTtata                                                                <  1:418335/139‑1 (MQ=255)
                                                                       tACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGt                                                                                                                            <  1:1354760/78‑1 (MQ=255)
                                                                       tACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGt                                                                                                                            >  2:1354760/1‑78 (MQ=255)
                                                                       tACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        <  1:1478681/130‑1 (MQ=255)
                                                                       tACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        >  2:1478681/1‑130 (MQ=255)
                                                                        aCTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAAt                                                              >  1:763865/1‑139 (MQ=255)
                                                                            aaGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCa                                                                             <  2:1326497/120‑1 (MQ=255)
                                                                            aaGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCa                                                                             >  1:1326497/1‑120 (MQ=255)
                                                                            aaGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCAc                                                                            <  2:1023908/121‑1 (MQ=255)
                                                                            aaGATTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCAc                                                                            >  1:1023908/1‑121 (MQ=255)
                                                                                 ttATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAAccccc                                                                                             <  2:780440/99‑1 (MQ=255)
                                                                                 ttATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAAccccc                                                                                             >  1:780440/1‑99 (MQ=255)
                                                                                 ttATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAg                                                     <  1:1347271/139‑1 (MQ=255)
                                                                                  tATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGa                                                    >  1:1406804/1‑139 (MQ=255)
                                                                                   aTTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTcc                                                                                                                     >  2:1413264/1‑73 (MQ=255)
                                                                                   aTTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTcc                                                                                                                     <  1:1413264/73‑1 (MQ=255)
                                                                                   aTTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGAt                                                   >  1:844881/1‑139 (MQ=255)
                                                                                    ttCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGAtt                                                  >  1:444290/1‑139 (MQ=255)
                                                                                                   tGGATAGCGGCATTCAATGTCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        >  1:177008/1‑102 (MQ=255)
                                                                                                   tGGATAGCGGCATTCAATGTCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        <  2:177008/102‑1 (MQ=255)
                                                                                                   tGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATAc                                   >  1:555516/1‑139 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAATGGCACTCGACGGTTATAATCTTCTAAAg                                                     <  1:416948/119‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACgg                                                                               <  1:296540/93‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACgg                                                                               <  2:898315/93‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACgg                                                                               >  1:898315/1‑93 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACgg                                                                               >  2:296540/1‑93 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        >  1:1441197/1‑100 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        <  2:1441197/100‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGAc                                                                       >  1:1035032/1‑101 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGAc                                                                       <  2:1035032/101‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTtata                                                                >  1:1178929/1‑108 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTtata                                                                <  2:1178929/108‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAAt                                     >  2:176266/1‑135 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAAt                                     <  1:176266/135‑1 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGt                                 >  2:768831/1‑139 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGt                                 >  1:665580/1‑139 (MQ=255)
                                                                                                     gATAGCGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATATTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAATGGCACTCGACGGTTATAATCTTCTAAAg                                                     >  2:416948/1‑119 (MQ=255)
                                                                                                          cgtcATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATa                                                                                                   >  1:1336027/4‑68 (MQ=255)
                                                                                                          cgtcATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATa                                                                                                   <  2:1336027/65‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGTGTTTCTTTTGAAATAAcccc                                                                                              <  2:1383979/73‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGTGTTTCTTTTGAAATAAcccc                                                                                              >  1:1383979/1‑73 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCtt                                                                                                           >  1:482285/1‑60 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCtt                                                                                                           >  1:320040/1‑60 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCtt                                                                                                           <  2:1287716/60‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCtt                                                                                                           >  1:1287716/1‑60 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCtt                                                                                                           <  2:482285/60‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCtt                                                                                                           <  2:320040/60‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGaaa                                                                                                     <  1:836777/66‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAAtctt                                                           >  1:765913/1‑108 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAAtctt                                                           <  2:765913/108‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAAt                                                              >  2:1132390/1‑105 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAAt                                                              <  1:1132390/105‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGa                                             >  2:907101/1‑122 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGa                                             >  2:620668/1‑122 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGa                                             <  1:907101/122‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGa                                             <  1:620668/122‑1 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGa                            >  2:125103/1‑139 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAA‑‑‑TCTAAAGATTGTTGATACTGAATACGTGCTGAAGc                         >  1:139236/1‑139 (MQ=255)
                                                                                                          cGGCATTCAATGCCGCTTAGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGaaa                                                                                                     >  2:836777/1‑66 (MQ=255)
                                                                                                           ggCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGaa                           >  1:1427869/1‑139 (MQ=255)
                                                                                                           ggCATTCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGaa                           <  2:844881/139‑1 (MQ=255)
                                                                                                               ttCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTtata                                                                >  2:356099/1‑98 (MQ=255)
                                                                                                               ttCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTtata                                                                <  1:356099/98‑1 (MQ=255)
                                                                                                               ttCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATAc                                          <  2:902140/120‑1 (MQ=255)
                                                                                                               ttCAATGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATAc                                          >  1:902140/1‑120 (MQ=255)
                                                                                                                    tGCCGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAA‑‑‑TCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCa               <  2:139236/139‑1 (MQ=255)
                                                                                                                       cGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCTTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCa               <  1:768831/139‑1 (MQ=255)
                                                                                                                       cGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCa               >  1:1082671/1‑139 (MQ=255)
                                                                                                                       cGCTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCa               <  2:444290/139‑1 (MQ=255)
                                                                                                                         cTTTGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACt             <  2:555516/139‑1 (MQ=255)
                                                                                                                           ttGCTACTTATTAGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGt           <  2:1082671/139‑1 (MQ=255)
                                                                                                                                    attaGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        >  1:888069/1‑69 (MQ=255)
                                                                                                                                    attaGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGa                                                                        <  2:888069/69‑1 (MQ=255)
                                                                                                                                    attaGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTAt  <  2:763865/139‑1 (MQ=255)
                                                                                                                                    attaGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTAt  <  2:665580/139‑1 (MQ=255)
                                                                                                                                    attaGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTAt  >  1:925892/1‑139 (MQ=255)
                                                                                                                                    attaGCGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTAt  >  2:450089/1‑139 (MQ=255)
                                                                                                                                        |                                                                                                                                      
GCCAACCAGGCTTCTTTAGTTGCATCCGCCGCTTCAACGACTTGTGGCTGACGGTTTAATGGTGTGTTCATTACTAAAGCTTTATTCGCTTTATAAGCCTGGATAGCGGCATTCAATGCCGCTTTGCTACTTATTAACGTATCTTTGGTATGCTCCAGCGTTTCTTTTGAAATAACCCCCTGCTTCGCTAACGGCACTCGACGGTTATAATCTTCTAAAGATTGTTGATACTGAATACGTGCTGAAGCGACTTCGGCACTGTATTGTTTAT  >  NC_000913/2482726‑2482996

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: