| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 4,361,357 | A→G | L193S (TTG→TCG) | cadC ← | cadBA operon transcriptional activator |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 4,361,357 | 0 | A | G | 100.0% | 281.6 / NA | 74 | L193S (TTG→TCG) | cadC | cadBA operon transcriptional activator |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (40/34); total (40/34) | |||||||||||
AAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGA > NC_000913/4361225‑4361490 | aaGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATAc < 2:1154111/139‑1 (MQ=255) tGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGa < 1:170465/139‑1 (MQ=255) gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCgaaa < 1:818715/130‑1 (MQ=255) gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCgaaa > 2:818715/1‑130 (MQ=255) gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGAtt > 2:55180/1‑139 (MQ=255) gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGAtt > 1:1383827/1‑139 (MQ=255) gagaAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGAtt > 2:420844/1‑139 (MQ=255) aaGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGc < 2:460865/139‑1 (MQ=255) aGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCt < 2:1383827/139‑1 (MQ=255) ggTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTc > 1:795594/1‑139 (MQ=255) tgtTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCAt > 2:530731/1‑139 (MQ=255) tAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAgg > 2:1074924/1‑139 (MQ=255) tGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGAtt > 2:467277/1‑122 (MQ=255) tGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGAtt < 1:467277/122‑1 (MQ=255) tGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTg < 2:1147871/124‑1 (MQ=255) tGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTg > 1:1147871/1‑124 (MQ=255) tGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACgt > 2:676058/1‑139 (MQ=255) tGTAGCCACCAAATCACACACGCCTATCGCGTAAGCGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTGTTTACCATATTAATGTCACTACCGCGTGGATTCAGAGACATACGTGATTTGCTCATAGGAACACgt > 2:232357/1‑139 (MQ=255) tCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGaa > 2:1465347/1‑132 (MQ=255) tCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGaa < 1:1465347/132‑1 (MQ=255) tCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACgtgt > 1:1203757/1‑139 (MQ=255) ccaccaAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATc < 1:788970/139‑1 (MQ=255) aTCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACtt > 2:1176353/1‑139 (MQ=255) cTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc < 1:55180/139‑1 (MQ=255) cTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc > 1:1047946/1‑139 (MQ=255) cTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc < 2:1203757/139‑1 (MQ=255) cTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc < 1:1074924/139‑1 (MQ=255) aTCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCa < 1:256303/139‑1 (MQ=255) gagagCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTacac > 1:877672/1‑139 (MQ=255) gggAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGa < 2:800149/139‑1 (MQ=255) ggAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGATATACGCGATTTGCt < 1:915217/78‑1 (MQ=255) ggAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCt > 2:915217/1‑78 (MQ=255) ggAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGac > 1:1273206/1‑139 (MQ=255) cTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTAcaca > 2:372661/1‑122 (MQ=255) cTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTAcaca < 1:372661/122‑1 (MQ=255) tCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAg < 1:420844/139‑1 (MQ=255) cAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGa < 1:1176353/139‑1 (MQ=255) tACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGaaaaaaaa < 2:451488/139‑1 (MQ=255) aCTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCAt < 1:450726/139‑1 (MQ=255) ccATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc < 2:429735/85‑1 (MQ=255) ccATATTAATGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc > 1:429735/1‑85 (MQ=255) tGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTg > 1:536100/1‑38 (MQ=255) tGTCAATATCGCGTGGATTGAGCGAAATACGCGATTTg < 2:536100/38‑1 (MQ=255) tCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTaca < 2:1141793/84‑1 (MQ=255) tCAATATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTaca > 1:1141793/1‑84 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCTATTTGTTCATAGGAAGACGTATATCAAGACTTAAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTg > 2:975907/1‑139 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAgg < 1:1079013/42‑1 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAgg > 2:1079013/1‑42 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGa < 2:520107/43‑1 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGa > 1:520107/1‑43 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTg > 1:1457703/1‑77 (MQ=255) aaTATCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTg < 2:1457703/77‑1 (MQ=255) atatCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc < 2:661789/71‑1 (MQ=255) atatCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc > 1:661789/1‑71 (MQ=255) atatCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGc > 1:267056/1‑139 (MQ=255) tatCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGt < 2:936263/134‑1 (MQ=255) tatCGCGTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCt > 1:272378/1‑139 (MQ=255) tatCGCGTGGATTGAGCGAAATACGCGAATTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGt > 1:936263/1‑134 (MQ=255) cgcgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCtttt > 1:1315989/1‑139 (MQ=255) gcgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTa > 1:1360303/1‑139 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAgg < 1:1257269/35‑1 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAgg > 2:1257269/1‑35 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCaa < 2:1107692/49‑1 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCaa > 1:1107692/1‑49 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGaaa > 1:545290/1‑58 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGaaa < 2:545290/58‑1 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATAc < 1:1295660/110‑1 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATAc > 2:1295660/1‑110 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTaa > 1:596050/1‑139 (MQ=255) cgTGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTaa > 1:527445/1‑139 (MQ=255) tGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc > 2:1426210/1‑63 (MQ=255) tGGATTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTAc < 1:1426210/63‑1 (MQ=255) aTTGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTggg > 1:762261/1‑139 (MQ=255) tGAGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGa > 2:631422/1‑139 (MQ=255) aGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCt < 1:326513/54‑1 (MQ=255) aGCGAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCa < 2:801207/104‑1 (MQ=255) | AAGGTGGAGAAGGTGTTAAGTGATGTCGCCACCAAATCACCCACGCCTATCGCGTAAGAGAGCTGATACGGGGAACTCCAGCTGTTACAACTTTTATTTACCATATTAATGTCAATATCGCGTGGATTGAGCAAAATACGCGATTTGCTCATAGGAAGACGTGTATCAAGACTTGAAAACGCTACCAGTGCTACACAGATACCTAACGACAACAGGAAAAAAAACCATACCCAAAAGGTAGTGAATCGTTTGCTTTTAACTGGGGA > NC_000913/4361225‑4361490 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |