Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	1,437,127	T→C	noncoding (7/109 nt)	micC →	sRNA antisense regulator of OmpC translation, Hfq‑dependent

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,437,127	0	T	C	100.0%	206.0 / NA	55	noncoding (7/109 nt)	micC	sRNA antisense regulator of OmpC translation, Hfq‑dependent
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (31/24);  total (31/24)

AAGTAAAACCTTAATCAAATAATTCCTCTGAAATGATAATAAGTCTGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAG  >  NC_000913/1437002‑1437256                                                                                                                              |                                                                                                                                  aaGTAAAACCTTAATCAAATAATTCCTCTGAAATGATAATAAGTCTGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTca                                                                                                                      <  1:629320/139‑1 (MQ=255)  aGTAAAACCTTAATCAAATAATTCCTCTGAAATGATAATAAGTCTGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTcac                                                                                                                     <  2:818083/139‑1 (MQ=255)                  aataatTCCTCTGAAATGATAATAAGTCTGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGt                                                                                                     <  2:954540/139‑1 (MQ=255)                             tGAAATGATAATAAGTCTGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCcattgc                                                                                          >  1:1055163/1‑139 (MQ=255)                                              tGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGc                                                                                                >  1:155976/1‑116 (MQ=255)                                              tGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGc                                                                                                <  2:155976/116‑1 (MQ=255)                                              tGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTcc                                                                         <  2:1055163/139‑1 (MQ=255)                                              aggTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGAATTGCCACTGATTTTcc                                                                         >  1:680039/2‑139 (MQ=255)                                                     tGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTcac                                                                                                                     >  1:1004610/1‑88 (MQ=255)                                                     tGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTcac                                                                                                                     <  2:1004610/88‑1 (MQ=255)                                                       tATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATaa                                                                <  1:10976/139‑1 (MQ=255)                                                        aTCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGattttatttt                                                                                                         >  2:147597/1‑97 (MQ=255)                                                        aTCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGattttatttt                                                                                                         <  1:147597/97‑1 (MQ=255)                                                        aTCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTcc                                                                         <  2:230694/129‑1 (MQ=255)                                                        aTCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTcc                                                                         >  1:230694/1‑129 (MQ=255)                                                            aaGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGa                                                           <  1:470389/139‑1 (MQ=255)                                                                        acaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACt                                                                                 <  2:549974/105‑1 (MQ=255)                                                                        acaAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACt                                                                                 >  1:549974/1‑105 (MQ=255)                                                                         caAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAg                                              >  1:70971/1‑139 (MQ=255)                                                                           aaaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACa                                                                     <  2:1016228/114‑1 (MQ=255)                                                                           aaaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACa                                                                     >  1:1016228/1‑114 (MQ=255)                                                                            aaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAgtcg                                           >  1:49529/1‑139 (MQ=255)                                                                            aaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAgtcg                                           >  2:1011591/1‑139 (MQ=255)                                                                            aaTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATATTCCAACATATAAAAAGACAAGCCAGAACAgtcg                                           >  1:708919/1‑139 (MQ=255)                                                                             aTAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCGGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAgccgt                                          >  2:701075/1‑139 (MQ=255)                                                                                               aTTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATCAAAAGACAAGCCCGAACAGTCGTCCGGGCttttttttagaa                        <  2:680039/139‑5 (MQ=255)                                                                                               aTTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCttttttttagaa                        <  2:708919/139‑5 (MQ=255)                                                                                               aTTTGCTATACGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCttttttttagaa                        <  2:49529/139‑5 (MQ=255)                                                                                                         cGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGAt                 >  2:872495/1‑135 (MQ=255)                                                                                                         cGTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGAt                 <  1:872495/135‑1 (MQ=255)                                                                                                          gTTATTCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGCTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATcc            <  1:701075/139‑1 (MQ=255)                                                                                                              ttCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACa                                                                     <  2:176220/79‑1 (MQ=255)                                                                                                              ttCTGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACa                                                                     >  1:176220/1‑79 (MQ=255)                                                                                                                 tGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAAc                                                                      >  1:47537/1‑75 (MQ=255)                                                                                                                 tGCGCGGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAAc                                                                      <  2:47537/75‑1 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGattttatt                                                                                                           <  1:409919/36‑1 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGattttatt                                                                                                           >  2:409919/1‑36 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTcc                                                                         <  1:379693/70‑1 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTcc                                                                         >  2:379693/1‑70 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCaa                                                                       <  2:1083437/72‑1 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCaa                                                                       >  1:1083437/1‑72 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  1:304289/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  2:470118/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  2:1023108/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  1:408480/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  2:557768/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  2:620164/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  1:954809/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  1:862004/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  1:1091142/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  1:543175/1‑139 (MQ=255)                                                                                                                   cgcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCaga   >  2:12732/1‑139 (MQ=255)                                                                                                                    gctggTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAgt                                             <  2:925711/94‑1 (MQ=255)                                                                                                                    gcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGC‑TTTTTTTTAGAATTGGATAATCCTTATCCagag  <  1:557768/139‑1 (MQ=255)                                                                                                                    gcgGGTTATACGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGACACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAgt                                             >  1:925711/1‑97 (MQ=255)                                                                                                                              |                                                                                                                                  AAGTAAAACCTTAATCAAATAATTCCTCTGAAATGATAATAAGTCTGGTGAATGTATCGAAGATAATACATACAAAATAAAAATTATACTTTTAATTTGCTATACGTTATTCTGCGCGGGTTATATGCCTTTATTGTCACAGATTTTATTTTCTGTTGGGCCATTGCATTGCCACTGATTTTCCAACATATAAAAAGACAAGCCCGAACAGTCGTCCGGGCTTTTTTTTTAGAATTGGATAATCCTTATCCAGAG  >  NC_000913/1437002‑1437256

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑