| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 1,170,493 | (G)5→6 | intergenic (‑119/+25) | ldtC ← / ← mfd | L,D‑transpeptidase linking Lpp to murein/transcription‑repair coupling factor |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,170,488 | 1 | . | G | 100.0% | 68.7 / NA | 19 | intergenic (‑114/+30) | ldtC/mfd | L,D‑transpeptidase linking Lpp to murein/transcription‑repair coupling factor |
| Reads supporting (aligned to +/- strand): ref base . (0/0); new base G (11/8); total (11/8) | |||||||||||
TTGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGAT‑GGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAG > NC_000913/1170402‑1170610 | ttGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGccc > 1:404447/1‑106 (MQ=255)ttGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGccc < 2:404447/106‑1 (MQ=255)ttGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGAt < 1:248668/111‑1 (MQ=255)ttGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGAt > 2:248668/1‑111 (MQ=255)ttGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATcgcg > 1:328322/1‑130 (MQ=255)ttGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATcgcg < 2:328322/130‑1 (MQ=255) aTAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTc < 1:586249/125‑1 (MQ=255) aTAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTc > 2:586249/1‑125 (MQ=255) tGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGcccc < 2:650817/87‑1 (MQ=255) tGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGcccc > 1:650817/1‑87 (MQ=255) tggatggTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAg < 2:805051/95‑1 (MQ=255) tggatggTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAg > 1:805051/1‑95 (MQ=255) tGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATcgcg < 1:658909/96‑1 (MQ=255) tGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATcgcg > 2:658909/1‑96 (MQ=255) tgtCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGAT‑ggg > 2:528236/1‑50 (MQ=255) tgtCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATCTTGCAGAT‑cgg < 1:528236/50‑1 (MQ=255) tCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTc > 2:119369/1‑139 (MQ=255) tGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGctcact > 2:135447/1‑139 (MQ=255) cAGGGAAGTGCAAATAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGCTCGCGTTCTCTTCCAGTTCACGCATATACTGGCGTACCCATTCGATACGCGTTTTCCGctcactca > 2:554568/1‑139 (MQ=255) tGCAAAGAATTTGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCCGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGa > 1:552675/1‑139 (MQ=255) tGTAAATGTTGCAGATGGGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAg < 2:552675/139‑1 (MQ=255) | TTGTAATAAACAGATAAGCCTGAATTATGGATGGTGACAGTGTCGGATAGTGCAGGGAAGTGCAAAGAATTTGTAAATGTTGCAGAT‑GGGGGCGCAGAAACGCCCCCGATTTACCATTAAGCGATCGCGTTCTCTTCCAGTTCACGCATAAACTGGCGTACCCATTCGATACGCGTTTTCCGCTCACTCAAATCCTGAATAAATTTCAG > NC_000913/1170402‑1170610 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |