| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NC_000913 | 2,649,905 | G→A | P795S (CCG→TCG) | yfhM ← | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,649,905 | 0 | G | A | 100.0% | 72.3 / NA | 23 | P795S (CCG→TCG) | yfhM | bacterial alpha2‑macroglobulin colonization factor ECAM, anti‑host protease defense factor, periplasmic inner membrane‑anchored lipoprotein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (13/10); total (13/10) | |||||||||||
CGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGGCCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGCGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAACTGGCTTTATCCAGTTTCAGCGTGACACGGTCGGGTCGCA > NC_000913/2649788‑2650030 | cGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGACCAt > 2:531129/1‑139 (MQ=255) tACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAc < 1:598770/126‑1 (MQ=255) tACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAc > 2:598770/1‑126 (MQ=255) aTCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTc > 2:822541/1‑99 (MQ=255) aTCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTc < 1:822541/99‑1 (MQ=255) aTCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGCGCGGCGata > 2:45067/1‑139 (MQ=255) gACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCCCTGGACTCGACCATCGCATAACCTTTCCCCGCCGTTGGCGCGGCGATATGCaa < 1:531129/139‑1 (MQ=255) gACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGCGCGGCGATATGCaa > 1:457628/1‑139 (MQ=255) ggTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGAATCGACCATCGCATAACCTTTAcc > 2:384493/1‑105 (MQ=255) ggTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACGGGACTCGACCATCGCATACCCTTTAcc < 1:384493/105‑1 (MQ=255) tATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAcc < 1:684708/83‑1 (MQ=255) tATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAcc > 2:684708/1‑83 (MQ=255) gCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCCCTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGTGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAAc < 2:279291/126‑1 (MQ=255) gCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGTGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAAc > 1:279291/1‑126 (MQ=255) cccTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAcc > 1:723074/1‑58 (MQ=255) cccTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAcc < 2:723074/58‑1 (MQ=255) aaCATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAcc > 2:848940/1‑46 (MQ=255) aaCATCAATCTCTTGCCACCACAGCGACCCTTCACTGGACTCGAcc < 1:848940/46‑1 (MQ=255) tGCCACCACGGCGACCCTTCACTGGACTCGACCAGCGCATACCCTTTACCCGCCGTTGGCGCGGCGATATGCAACTTAATGGGGTCGCCAGGGCGATAACTGGCTTTATCCAGTTTCAGCGTGACACGGTCGGGTCGCa < 1:480221/139‑1 (MQ=255) tGCCACCACAGCGACCCTTCCCTGGACTCGACCATCGCa < 1:505116/39‑1 (MQ=255) tGCCACCACAGCGACCCTTCACTGGACTCGACCATCGCa > 2:505116/1‑39 (MQ=255) tGCCACCACAGCGACCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGCGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAACTGGCTTTATCCAGTTTCAGCGTGACACGGTCGGGTCGCa > 2:480221/1‑139 (MQ=255) caGCGACCTTTCACTGGACTCGACCATCGAATAACCTTTACCCGCCGTTGGCGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAACTGGCTTTATc < 1:104684/102‑1 (MQ=255) caGCGACCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGCGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAACTGGCTTTATc > 2:104684/1‑102 (MQ=255) | CGCCAGGACGTACCACCAGCGTACTTAAATACAGATCATGACGATTCCAGGTTTTATCGACCGGAATCGTCAGATCCAGCCCTTGAGCCCGAACATCAATCTCTTGCCACCACAGCGGCCCTTCACTGGACTCGACCATCGCATAACCTTTACCCGCCGTTGGCGCGGCGATATGCAACTTAATGGTGTCGCCAGGGCGATAACTGGCTTTATCCAGTTTCAGCGTGACACGGTCGGGTCGCA > NC_000913/2649788‑2650030 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |